alpha-L-rhamnosidase [Geminisphaera colitermitum]
alpha-L-rhamnosidase( domain architecture ID 13078695)
alpha-L-rhamnosidase cleaves the terminal nonreducing alpha-L-rhamnosyl residue from natural rhamnoglycosides
List of domain hits
Name | Accession | Description | Interval | E-value | ||||||
Bac_rhamnosid6H | pfam17389 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial ... |
455-789 | 1.90e-142 | ||||||
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. : Pssm-ID: 407469 Cd Length: 340 Bit Score: 425.58 E-value: 1.90e-142
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Bac_rhamnosid_N super family | cl07232 | Alpha-L-rhamnosidase N-terminal domain; This family consists of bacterial rhamnosidase A and B ... |
161-336 | 2.98e-52 | ||||||
Alpha-L-rhamnosidase N-terminal domain; This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition. The actual alignment was detected with superfamily member pfam08531: Pssm-ID: 400715 Cd Length: 172 Bit Score: 180.19 E-value: 2.98e-52
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Bac_rhamnosid | pfam05592 | Bacterial alpha-L-rhamnosidase concanavalin-like domain; This family consists of bacterial ... |
344-449 | 5.19e-36 | ||||||
Bacterial alpha-L-rhamnosidase concanavalin-like domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. : Pssm-ID: 336149 Cd Length: 102 Bit Score: 131.22 E-value: 5.19e-36
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Bac_rhamnosid_C super family | cl38671 | Bacterial alpha-L-rhamnosidase C-terminal domain; This family consists of bacterial ... |
795-855 | 1.46e-14 | ||||||
Bacterial alpha-L-rhamnosidase C-terminal domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. The actual alignment was detected with superfamily member pfam17390: Pssm-ID: 379972 Cd Length: 78 Bit Score: 69.56 E-value: 1.46e-14
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Name | Accession | Description | Interval | E-value | ||||||
Bac_rhamnosid6H | pfam17389 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial ... |
455-789 | 1.90e-142 | ||||||
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. Pssm-ID: 407469 Cd Length: 340 Bit Score: 425.58 E-value: 1.90e-142
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Bac_rhamnosid_N | pfam08531 | Alpha-L-rhamnosidase N-terminal domain; This family consists of bacterial rhamnosidase A and B ... |
161-336 | 2.98e-52 | ||||||
Alpha-L-rhamnosidase N-terminal domain; This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition. Pssm-ID: 400715 Cd Length: 172 Bit Score: 180.19 E-value: 2.98e-52
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Bac_rhamnosid | pfam05592 | Bacterial alpha-L-rhamnosidase concanavalin-like domain; This family consists of bacterial ... |
344-449 | 5.19e-36 | ||||||
Bacterial alpha-L-rhamnosidase concanavalin-like domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. Pssm-ID: 336149 Cd Length: 102 Bit Score: 131.22 E-value: 5.19e-36
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Bac_rhamnosid_C | pfam17390 | Bacterial alpha-L-rhamnosidase C-terminal domain; This family consists of bacterial ... |
795-855 | 1.46e-14 | ||||||
Bacterial alpha-L-rhamnosidase C-terminal domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. Pssm-ID: 379972 Cd Length: 78 Bit Score: 69.56 E-value: 1.46e-14
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GDB1 | COG3408 | Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism]; |
521-700 | 6.44e-06 | ||||||
Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism]; Pssm-ID: 442634 [Multi-domain] Cd Length: 353 Bit Score: 49.11 E-value: 6.44e-06
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Name | Accession | Description | Interval | E-value | ||||||
Bac_rhamnosid6H | pfam17389 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial ... |
455-789 | 1.90e-142 | ||||||
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. Pssm-ID: 407469 Cd Length: 340 Bit Score: 425.58 E-value: 1.90e-142
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Bac_rhamnosid_N | pfam08531 | Alpha-L-rhamnosidase N-terminal domain; This family consists of bacterial rhamnosidase A and B ... |
161-336 | 2.98e-52 | ||||||
Alpha-L-rhamnosidase N-terminal domain; This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition. Pssm-ID: 400715 Cd Length: 172 Bit Score: 180.19 E-value: 2.98e-52
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Bac_rhamnosid | pfam05592 | Bacterial alpha-L-rhamnosidase concanavalin-like domain; This family consists of bacterial ... |
344-449 | 5.19e-36 | ||||||
Bacterial alpha-L-rhamnosidase concanavalin-like domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. Pssm-ID: 336149 Cd Length: 102 Bit Score: 131.22 E-value: 5.19e-36
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Bac_rhamnosid_C | pfam17390 | Bacterial alpha-L-rhamnosidase C-terminal domain; This family consists of bacterial ... |
795-855 | 1.46e-14 | ||||||
Bacterial alpha-L-rhamnosidase C-terminal domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. Pssm-ID: 379972 Cd Length: 78 Bit Score: 69.56 E-value: 1.46e-14
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GDB1 | COG3408 | Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism]; |
521-700 | 6.44e-06 | ||||||
Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism]; Pssm-ID: 442634 [Multi-domain] Cd Length: 353 Bit Score: 49.11 E-value: 6.44e-06
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cNMP_binding | pfam00027 | Cyclic nucleotide-binding domain; This domain sensor domain can bind cAMP, cGMP, c-di-GMP, ... |
360-409 | 7.06e-03 | ||||||
Cyclic nucleotide-binding domain; This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Pssm-ID: 459637 [Multi-domain] Cd Length: 89 Bit Score: 36.43 E-value: 7.06e-03
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Blast search parameters | ||||
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