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Conserved domains on  [gi|85676406|dbj|BAE77656|]
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50S ribosomal subunit protein L33 [Escherichia coli str. K-12 substr. W3110]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 4.98e-23

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 81.40  E-value: 4.98e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 85676406   1 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 4.98e-23

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 81.40  E-value: 4.98e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 85676406   1 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 3-53 4.84e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 74.04  E-value: 4.84e-20
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|.
gi 85676406  3 KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:COG0267  2 AGMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-53 1.21e-18

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 70.56  E-value: 1.21e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 85676406    2 AKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:TIGR01023  3 KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
Ribosomal_L33 pfam00471
Ribosomal protein L33;
8-53 1.55e-17

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 67.45  E-value: 1.55e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 85676406    8 KIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 4.98e-23

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 81.40  E-value: 4.98e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 85676406   1 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 3-53 4.84e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 74.04  E-value: 4.84e-20
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|.
gi 85676406  3 KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:COG0267  2 AGMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-53 1.21e-18

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 70.56  E-value: 1.21e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 85676406    2 AKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:TIGR01023  3 KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
Ribosomal_L33 pfam00471
Ribosomal protein L33;
8-53 1.55e-17

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 67.45  E-value: 1.55e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 85676406    8 KIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG PRK00504
50S ribosomal protein L33; Validated
 4-53 6.55e-08

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 43.37  E-value: 6.55e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 85676406   4 GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:PRK00504  1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
rpl33 CHL00104
ribosomal protein L33
 21-53 1.38e-07

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 42.65  E-value: 1.38e-07
                        10        20        30
                ....*....|....*....|....*....|...
gi 85676406  21 YTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
Cdd:CHL00104 33 YITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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