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Conserved domains on  [gi|550045151|ref|WP_022580605|]
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DUF4123 domain-containing protein [Pseudomonas aeruginosa]

Protein Classification

DUF4123 domain-containing protein( domain architecture ID 10607157)

DUF4123 domain-containing protein similar to Vibrio cholerae accessory protein VasW that plays an accessory role in VasX-mediated bacterial killing

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4123 pfam13503
Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It ...
 24-138 2.61e-20

Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.


:

Pssm-ID: 433262  Cd Length: 128  Bit Score: 83.61  E-value: 2.61e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550045151   24 YAIFGSASDAAPLQAYYREDSPPLPLPLWNGTPYADWQPVMPYLAKLSPSSVFLDWAASEK--------SRDWGWLAVST 95
Cdd:pfam13503   1 YALLDGAADPDLLALLYALGPAAASVPLYAGTPLEELAEVGPWLVELDDASSLLLKLLELAllrleeggGPMWGWLLASA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 550045151   96 WSTDAILEHLRSLTQVRMPDGSEVFFRFWDGRHLLPILAHLGE 138
Cdd:pfam13503  81 APLDALARHLRSLLQVRLPDGEAALFRFYDPRVLRALLPALDP 123
 
Name Accession Description Interval E-value
DUF4123 pfam13503
Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It ...
 24-138 2.61e-20

Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.


Pssm-ID: 433262  Cd Length: 128  Bit Score: 83.61  E-value: 2.61e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550045151   24 YAIFGSASDAAPLQAYYREDSPPLPLPLWNGTPYADWQPVMPYLAKLSPSSVFLDWAASEK--------SRDWGWLAVST 95
Cdd:pfam13503   1 YALLDGAADPDLLALLYALGPAAASVPLYAGTPLEELAEVGPWLVELDDASSLLLKLLELAllrleeggGPMWGWLLASA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 550045151   96 WSTDAILEHLRSLTQVRMPDGSEVFFRFWDGRHLLPILAHLGE 138
Cdd:pfam13503  81 APLDALARHLRSLLQVRLPDGEAALFRFYDPRVLRALLPALDP 123
 
Name Accession Description Interval E-value
DUF4123 pfam13503
Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It ...
 24-138 2.61e-20

Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.


Pssm-ID: 433262  Cd Length: 128  Bit Score: 83.61  E-value: 2.61e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550045151   24 YAIFGSASDAAPLQAYYREDSPPLPLPLWNGTPYADWQPVMPYLAKLSPSSVFLDWAASEK--------SRDWGWLAVST 95
Cdd:pfam13503   1 YALLDGAADPDLLALLYALGPAAASVPLYAGTPLEELAEVGPWLVELDDASSLLLKLLELAllrleeggGPMWGWLLASA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 550045151   96 WSTDAILEHLRSLTQVRMPDGSEVFFRFWDGRHLLPILAHLGE 138
Cdd:pfam13503  81 APLDALARHLRSLLQVRLPDGEAALFRFYDPRVLRALLPALDP 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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