|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
4-236 |
7.27e-112 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 320.37 E-value: 7.27e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 4 IADPVARRRQNISAIPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAE 83
Cdd:PRK11922 1 MTTAPASRPPPLSAASDRELVARVLAGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRGDAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 84 LSTWLTRITLNEALGRVRARKNTAGLEEIDMQTTLRGGEvlQFPSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIF 163
Cdd:PRK11922 81 LSTWLSRIVLNEALGRLRRRRRLVNLAEMVMASTIAGGE--RTPLADPAEDPERAAARREIRALLERAIDALPDAFRAVF 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528839879 164 VLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQSIEKQLSGAFSALFPFDGARCASMGDRVIAALRQTS 236
Cdd:PRK11922 159 VLRVVEELSVEETAQALGLPEETVKTRLHRARRLLRESLAREIGPALLDAFPFAGARCDRIVAAVLARLAERS 231
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
20-206 |
2.79e-45 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 149.37 E-value: 2.79e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGR 99
Cdd:COG1595 4 DEELLERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGRGSFRAWLYRIARNLAIDH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 VRARKNTAGLEEIDMQTTlrggevlqfpsSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASY 179
Cdd:COG1595 84 LRKRRRRRELLDELAEEL-----------PDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEI 152
|
170 180
....*....|....*....|....*..
gi 528839879 180 LGIKPETAKTRLHRARKLMRQSIEKQL 206
Cdd:COG1595 153 LGISEGTVKSRLSRARKKLREALEEEG 179
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
20-204 |
1.27e-32 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 117.10 E-value: 1.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGR 99
Cdd:PRK09641 5 IKRLIKQVKKGDQNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINRKFSTWLYRIATNLTIDR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 VRARKNTAGLEEidmqtTLRGGEVLQFPSSLSATD--PESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAA 177
Cdd:PRK09641 85 LRKRKPDYYLDA-----EVAGTEGLTMYSQLAADDalPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEIS 159
|
170 180
....*....|....*....|....*..
gi 528839879 178 SYLGIKPETAKTRLHRARKLMRQSIEK 204
Cdd:PRK09641 160 EILDLPVGTVKTRIHRGREALRKQLRH 186
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
34-202 |
2.04e-31 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 112.83 E-value: 2.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 34 AIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEID 113
Cdd:TIGR02937 2 AFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRLRRELDLL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 114 MQttlrggevlqfpSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHR 193
Cdd:TIGR02937 82 EE------------LLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKR 149
|
....*....
gi 528839879 194 ARKLMRQSI 202
Cdd:TIGR02937 150 ARKKLRELL 158
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
24-203 |
1.41e-30 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 111.44 E-value: 1.41e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 24 VSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRAR 103
Cdd:PRK09652 1 VERVQRGDRAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAAFYTWLYRIARNTAINYLRKQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 104 KNTAGLEEID--MQTTLRGGEVLQFPSSlsatdPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLG 181
Cdd:PRK09652 81 GRRPPASDVDaeEAEDFDLADALRDIST-----PENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMG 155
|
170 180
....*....|....*....|..
gi 528839879 182 IKPETAKTRLHRARKLMRQSIE 203
Cdd:PRK09652 156 CPIGTVRSRIFRAREALRAKLQ 177
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
34-208 |
2.56e-28 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 105.44 E-value: 2.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 34 AIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEid 113
Cdd:PRK11924 14 AFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGKGSARTWLLTIARNVCYDLLRRRRREKAVLS-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 114 mqttlrgGEVLQFPSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHR 193
Cdd:PRK11924 92 -------DDALEPEFAETAETPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRLRR 164
|
170
....*....|....*
gi 528839879 194 ARKLMRQSIEKQLSG 208
Cdd:PRK11924 165 ARQLLRECLEAQWEA 179
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
18-196 |
4.22e-27 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 102.86 E-value: 4.22e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 18 IPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEAL 97
Cdd:PRK09643 12 RSDAELLAAHVAGDRYAFGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRGDAAVSSWLHRIVVNACL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 98 GRVRARKN--TAGLEEIDmqttlrggevlqfPSSLSATDPESELSRSQArhlLEQAVDDLPDEFRAIFVLREVEGMSTEE 175
Cdd:PRK09643 92 DRLRRAKArpTVPLDDVY-------------PVAQLERDPTARVETALA---VQRALMRLPVEQRAALVAVDMQGYSVAD 155
|
170 180
....*....|....*....|.
gi 528839879 176 AASYLGIKPETAKTRLHRARK 196
Cdd:PRK09643 156 AARMLGVAEGTVKSRCARGRA 176
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
19-204 |
7.87e-26 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 99.34 E-value: 7.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 19 PDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFR-GEAELSTWLTRITLNEAL 97
Cdd:PRK05602 6 PDEELLARVAAGDPAAFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRpGEARFDTWLHRVVLNLCY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 98 GRVRARKNTAGLEEIDMQTTLRGgevlqfpsslsatdPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAA 177
Cdd:PRK05602 86 DRLRRRREVPVEDAPDVPDPAPG--------------PDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAA 151
|
170 180
....*....|....*....|....*..
gi 528839879 178 SYLGIKPETAKTRLHRARKLMRQSIEK 204
Cdd:PRK05602 152 AVMDISVDALESLLARGRRALRAQLAD 178
|
|
| Sig70_famx3 |
TIGR02954 |
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of ... |
20-204 |
8.57e-25 |
|
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Pssm-ID: 213752 [Multi-domain] Cd Length: 169 Bit Score: 95.93 E-value: 8.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGR 99
Cdd:TIGR02954 3 DEELVKKAKRGNKPAFESLIKKHKEKLYKTAFIYVKNEHDALDVIQETVYKAYLSIDKLKHPKYFNTWLTRILINECIDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 VRARKNTAGLEEIDMQTTLRGgevlqfpsslsATDPESELSrsqarhlLEQAVDDLPDEFRAIFVLREVEGMSTEEAASY 179
Cdd:TIGR02954 83 LKKKKKVIPFDPNTSIEKGEC-----------ETHADSRLD-------LYKAIDTLNDKYQTAIILRYYHDLTIKEIAEV 144
|
170 180
....*....|....*....|....*
gi 528839879 180 LGIKPETAKTRLHRARKLMRQSIEK 204
Cdd:TIGR02954 145 MNKPEGTVKTYLHRALKKLKKRLEE 169
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
34-202 |
9.17e-25 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 95.71 E-value: 9.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 34 AIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNtagleEID 113
Cdd:TIGR02985 2 AFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWENRETLEISESIKAYLFTIVKNRCLNYLRHKQV-----EEK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 114 MQTTLRGGEVLQFpsslSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHR 193
Cdd:TIGR02985 77 YQEELAEIEEREL----SEADPEEELEAKELEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYHITK 152
|
....*....
gi 528839879 194 ARKLMRQSI 202
Cdd:TIGR02985 153 ALKFLRKEL 161
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
32-204 |
5.97e-24 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 94.04 E-value: 5.97e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 32 EPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEA---LGRVRARK-NTA 107
Cdd:PRK09415 15 EDLIDEIMNEYGQEVLQLVYSYVKNKEVAEDLTQEIFVKCYKSLHTYKGKSSLKTWLYRIAINHCkdyLKSWHNKKvIVT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 108 GLEEIDMQTTLRggevlqfpsslsatDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETA 187
Cdd:PRK09415 95 EDIFTYMESQKE--------------SVEEEVIQNAEDERLASAVMSLPIKYREVIYLFYYEELSIKEIAEVTGVNENTV 160
|
170
....*....|....*..
gi 528839879 188 KTRLHRARKLMRQSIEK 204
Cdd:PRK09415 161 KTRLKKAKELLKKGLEE 177
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
20-209 |
2.08e-23 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 93.33 E-value: 2.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGR 99
Cdd:PRK11923 7 DQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 V--RARKNTAGLEEIDMQTTLRGGEVLQFPSSlsatdPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAA 177
Cdd:PRK11923 87 LvsRGRRPPDSDVSSEDAEFYDGDHALKDIES-----PERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIA 161
|
170 180 190
....*....|....*....|....*....|..
gi 528839879 178 SYLGIKPETAKTRLHRARKLMRQSIEKQLSGA 209
Cdd:PRK11923 162 SVMQCPVGTVRSRIFRAREAIDKALQPLLQES 193
|
|
| RpoE_Sigma70 |
TIGR02939 |
RNA polymerase sigma factor RpoE; A sigma factor is a DNA-binding protein protein that binds ... |
20-206 |
1.49e-22 |
|
RNA polymerase sigma factor RpoE; A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Pssm-ID: 131985 [Multi-domain] Cd Length: 190 Bit Score: 90.66 E-value: 1.49e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGR 99
Cdd:TIGR02939 7 DLELVERVQRGEKQAFDLLVRKYQHKVVALVGRYVRDSSEVEDVAQEAFVKAYRALSSFRGDSAFYTWLYRIAVNTAKNH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 VRARKNTAGLEEIDMQTtlrgGEVLQFPSSLSATD-PESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAAS 178
Cdd:TIGR02939 87 LVAQGRRPPTSDVEIED----AEHFEGADRLREIDtPERLLLSRELEQTVMRAVEALPEDLRTAITLRELEGLSYEDIAR 162
|
170 180
....*....|....*....|....*...
gi 528839879 179 YLGIKPETAKTRLHRArklmRQSIEKQL 206
Cdd:TIGR02939 163 IMDCPVGTVRSRIFRA----REAIAIRL 186
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
23-205 |
3.55e-22 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 89.39 E-value: 3.55e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 23 LVSLAKQGDEPAIRAIVQRHNQRLFRTARAIirSDWEA-EDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEAL-GRV 100
Cdd:PRK12518 1 LILRCQRGDRQSFRQLYRRYQQKVRSTLYQL--CGRELlDDLVQEVFLRVWKGLPKLRNPAYFSTWLYRITWNVATdARR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 101 RARKNtagleeidmQTTLRGGEVLQFPSSLSATDPESELSRSQarhLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYL 180
Cdd:PRK12518 79 QFAQR---------PSRIQDDSLNDQPSRPSDTPDLMQLHYQD---LVQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEIL 146
|
170 180
....*....|....*....|....*
gi 528839879 181 GIKPETAKTRLHRARKLMRQSIEKQ 205
Cdd:PRK12518 147 NIPVGTVKSRLFYARRQLRKFLQQQ 171
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
16-205 |
6.30e-22 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 89.46 E-value: 6.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 16 SAIPDAElvslAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLA-----TFRGeaelstWLTR 90
Cdd:PRK09647 15 TAVFDAT----GDKATMPSWEELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQnyqpgTFEG------WLHR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 91 ITLNEALGRVRARkntaglEEIDMQTTLRGGEVLqfpsslsatdPESELSRSQARHL------LEQAVDDLPDEFRAIFV 164
Cdd:PRK09647 85 ITTNLFLDMVRRR------ARIRMEALPEDYDRV----------PGDEPNPEQIYHDarldpdLQAALDSLPPEFRAAVV 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 528839879 165 LREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQSIEKQ 205
Cdd:PRK09647 149 LCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQQLRAALAAH 189
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
16-196 |
1.06e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 88.64 E-value: 1.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 16 SAIPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNE 95
Cdd:PRK12515 5 QATTDEMLLARIAQGDRTAMQTLYGRHHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFEGRSQVSTWLLSIARFK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 96 ALGRVRARKNtaglEEIDMQttlrggEVLQFPSslSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEE 175
Cdd:PRK12515 85 ALSALRRRKH----EEIDDE------AAAAIED--GADTPEVALQKSDTSAALRACLAKLSPAHREIIDLVYYHEKSVEE 152
|
170 180
....*....|....*....|.
gi 528839879 176 AASYLGIKPETAKTRLHRARK 196
Cdd:PRK12515 153 VGEIVGIPESTVKTRMFYARK 173
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
20-204 |
2.70e-21 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 87.00 E-value: 2.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGR 99
Cdd:PRK09638 5 EKELIQKAKKGDDAALTTLFQQHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQGRSKFSTWLISIASRLYKDH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 VRARKNTAGLEEIDMQTTLRggevlqfpsslsATDPESELSRSQARHLLEqAVDDLPDEFRAIFVLREVEGMSTEEAASY 179
Cdd:PRK09638 85 LRKQKREKLRLQRAKEETLR------------KEKWEAAIKGAEWSEMLD-ALSKLDPEFRAPVILKHYYGYTYEEIAKM 151
|
170 180
....*....|....*....|....*
gi 528839879 180 LGIKPETAKTRLHRARKLMRQSIEK 204
Cdd:PRK09638 152 LNIPEGTVKSRVHHGIKQLRKEWGQ 176
|
|
| Sig70_famx1 |
TIGR02943 |
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of ... |
46-208 |
2.89e-18 |
|
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 274359 [Multi-domain] Cd Length: 188 Bit Score: 79.42 E-value: 2.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 46 LFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEIDMQT--------- 116
Cdd:TIGR02943 15 LLRFARLQLRDRDLAEDAVQETLLAALSHRDSFAGRSALKTWLFAILKNKIIDALRAKGREVKVSDLDDELddeafnalf 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 117 TLRGGEVLQFPSSLSATdPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARK 196
Cdd:TIGR02943 95 TQNGHWAQHGQPQHWNT-PEKQLENKEFWEVFEACLYHLPEQTARVFMMREVLGFESDEICQELEISTSNCHVLLYRARL 173
|
170
....*....|..
gi 528839879 197 LMRQSIEKQLSG 208
Cdd:TIGR02943 174 SLRACLSINWFG 185
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
30-199 |
4.52e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 78.96 E-value: 4.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 30 GDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGL 109
Cdd:PRK12513 23 GDAAAFEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARFRTWLYQIARNLLIDHWRRHGARQAP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 110 EeIDMQTTLRGGevlqfpsSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKT 189
Cdd:PRK12513 103 S-LDADEQLHAL-------ADDGAAPEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPEETVKS 174
|
170
....*....|
gi 528839879 190 RLHRARKLMR 199
Cdd:PRK12513 175 RLRYALQKLR 184
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
31-204 |
1.62e-17 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 76.91 E-value: 1.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 31 DEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNlaTFRGEAELSTWLTRITLNEALGRVRARKNTAGLE 110
Cdd:PRK09639 1 SDETFEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRS--DFKGIENEKGWLIKSARNVAYNYLRSEKRRRARI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 111 EIDMQTTlrggEVLQFPSslsatdPESELSRSQARHLLEQAVDDLPDEFRAIFVLREvEGMSTEEAASYLGIKPETAKTR 190
Cdd:PRK09639 79 LGEFQWQ----EVDNEPS------PEEIWIRKEEITKVQEVLAKMTERDRTVLLLRF-SGYSYKEIAEALGIKESSVGTT 147
|
170
....*....|....
gi 528839879 191 LHRARKLMRQSIEK 204
Cdd:PRK09639 148 LARAKKKFRKIYEQ 161
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
38-203 |
3.29e-16 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 73.87 E-value: 3.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 38 IVQRHNQRLfrtaRAIIRS----DWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEId 113
Cdd:PRK09637 6 IWSEYKAQL----KAFLHSrvsnEADVDDLLQEVLIKTHSNLHSLKDGSSIKSWLYQIANNTIIDFYRKKNRSEELPDD- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 114 mqttlrggevLQFPSSLSATDPESELSrsqarHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHR 193
Cdd:PRK09637 81 ----------LLFEDEEREENAKKELA-----PCLRPFIDALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQR 145
|
170
....*....|
gi 528839879 194 ARKLMRQSIE 203
Cdd:PRK09637 146 GRVKLKELLE 155
|
|
| SigH_actino |
TIGR02947 |
RNA polymerase sigma-70 factor, TIGR02947 family; This group of sigma factors are members of ... |
45-199 |
1.11e-15 |
|
RNA polymerase sigma-70 factor, TIGR02947 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Pssm-ID: 131992 [Multi-domain] Cd Length: 193 Bit Score: 72.70 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 45 RLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEIDmqttlrggEVL 124
Cdd:TIGR02947 23 QLYGAALRMTRNPADAEDLVQEAYAKAFSSFHQFKPGTNLKAWLYRILTNTYINSYRKAQRRPQQSDDD--------DIE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 125 QFPSSLSATDPESELSRSQARHL-------LEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKL 197
Cdd:TIGR02947 95 DWQLAKAASHTSNGLRSAELEALdglpdqdIKDALQGLPEEFRQAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRKQ 174
|
..
gi 528839879 198 MR 199
Cdd:TIGR02947 175 LR 176
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
11-203 |
9.01e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 70.09 E-value: 9.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 11 RRQNISAIPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTR 90
Cdd:PRK12519 7 APTSLSSRSDAELFSALKAGQSAALGVLYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRKSSYDPKRGSLSSYLLT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 91 ITLNEALGRVRARKNTAGLEEidmqttlRGGEVLQfpSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEG 170
Cdd:PRK12519 87 LTRSRAIDRLRSRRSRQRLLE-------RWQQELL--GEASEDTPLEQASLAERSQRVQTALAQLPESQRQVLELAYYEG 157
|
170 180 190
....*....|....*....|....*....|....*..
gi 528839879 171 MSTEEAASYLGIKPETAKTRLHRA----RKLMRQSIE 203
Cdd:PRK12519 158 LSQSEIAKRLGIPLGTVKARARQGllklRELLQDLLE 194
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
20-211 |
2.76e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 69.50 E-value: 2.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFR-GEAELSTWLTRITLNEAlg 98
Cdd:PRK12538 50 DEELLDRLATDDEAAFRLLVERHIDRAYAIALRIVGNRADAEDVVQDTMLKVWTHRGRWQhGRAKFSTWLYRVVSNRC-- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 99 rvrarkntagleeIDMQTTLRGGEVLQFPSSLSAT-DPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAA 177
Cdd:PRK12538 128 -------------IDLRRKPRTENVDAVPEVADGKpDAVSVIERNELSDLLEAAMQRLPEQQRIAVILSYHENMSNGEIA 194
|
170 180 190
....*....|....*....|....*....|....*..
gi 528839879 178 SYLGIKPETAKTRLHRARKLMRQSI---EKQLSGAFS 211
Cdd:PRK12538 195 EVMDTTVAAVESLLKRGRQQLRDLLrrhERDIRHAFT 231
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
28-203 |
4.57e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 67.84 E-value: 4.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 28 KQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALG-RVRARKNT 106
Cdd:PRK12543 2 LSGDQEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRPFRFWLIGLVIKQIHSwRRKRWRRF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 107 AGLEEIDMqttlrggevlqFPSSLSATDPESELSRSQARHLLeQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPET 186
Cdd:PRK12543 82 RIFEKAEE-----------QRKPVSIDFSEDVLSKESNQELI-ELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGT 149
|
170
....*....|....*..
gi 528839879 187 AKTRLHRARKLMRQSIE 203
Cdd:PRK12543 150 VKSRIHAALKKLRQKEQ 166
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
46-200 |
1.35e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 66.73 E-value: 1.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 46 LFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEIDMQttlrggevlQ 125
Cdd:PRK12511 17 LRRYARSLTRDSAEAEDLVHDALVRALERRASFRSGGNLRTWLMSILHNAFIDELRRRRVEARRADELAV---------L 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528839879 126 FPSSLSATDpESELSRSQARhlleQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQ 200
Cdd:PRK12511 88 ADASLPAAQ-EHAVRLAQIR----DAFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALRA 157
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
29-203 |
2.10e-13 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 65.87 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 29 QGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKntag 108
Cdd:TIGR02983 2 SATEEEFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTYVRWDRIRDPDAPDAYVRRVLVNLARSRWRRRR---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 109 leeidmqttlrggeVLQFPSSLSATDPESELSRSQA-RHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETA 187
Cdd:TIGR02983 78 --------------LLELPTRELPDAAAPDPAPDVAlRAALARALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTV 143
|
170
....*....|....*.
gi 528839879 188 KTRLHRARKLMRQSIE 203
Cdd:TIGR02983 144 KSRLSRALARLRELLE 159
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
32-208 |
2.77e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 65.66 E-value: 2.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 32 EPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTagLEE 111
Cdd:PRK12522 2 EEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYRKKKRW--KDR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 112 I-DMQTTLRGGEVlQFPSSlsATDPESELSRSQARhLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTR 190
Cdd:PRK12522 80 IlDLFHKEDGGEI-EFADD--VNISEEFIQKVEAE-MIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYR 155
|
170
....*....|....*...
gi 528839879 191 LHRARKLMRQSIEKQLSG 208
Cdd:PRK12522 156 LNYAKKQMREHLEGFVHE 173
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
60-203 |
4.30e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 65.72 E-value: 4.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 60 AEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLeeidmqTTLRGGEVL--QFPSSLSA----- 132
Cdd:PRK12532 33 AEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKV------FTLLDDELLdeAFESHFSQnghwt 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528839879 133 --------TDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQSIE 203
Cdd:PRK12532 107 pegqpqhwNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQ 185
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
15-205 |
7.45e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 64.91 E-value: 7.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 15 ISAIPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFR-GEAELSTWLTRITL 93
Cdd:PRK12524 8 LSDVSDEALLVLYANGDPAAARALTLRLAPRALAVATRVLGDRAEAEDVTQEAMLRLWRIAPDWRqGEARVSTWLYRVVC 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 94 NEALGRVR-ARKNTAGLEEIDmqttlrggevlQFPSslSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMS 172
Cdd:PRK12524 88 NLCTDRLRrRRRASVDLDDAP-----------EPAD--AAPGAEEALIEGDRMRALDAALAALPERQRQAVVLRHIEGLS 154
|
170 180 190
....*....|....*....|....*....|...
gi 528839879 173 TEEAASYLGIKPETAKTRLHRARKLMRQSIEKQ 205
Cdd:PRK12524 155 NPEIAEVMEIGVEAVESLTARGKRALAALLAGQ 187
|
|
| PRK12520 |
PRK12520 |
RNA polymerase sigma factor; Provisional |
33-203 |
1.96e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237126 [Multi-domain] Cd Length: 191 Bit Score: 63.60 E-value: 1.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 33 PAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVR--ARKNTAGLE 110
Cdd:PRK12520 2 TIAPAQLEALRPHLLRFARLQLRDPALAEDAVSETLLAVLEHPERFAGQSSLKTYLVGILKHKIIDAIRsgRREVRLSLD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 111 EIDMQTT--------LRGGEVLQFPSSLSatDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGI 182
Cdd:PRK12520 82 DADEQSDddlfdalfAADGHYREPPSDWG--DPDAALSRREFFEVLQACVDRLPPRTGRVFMMREWLELETEEICQELQI 159
|
170 180
....*....|....*....|.
gi 528839879 183 KPETAKTRLHRARKLMRQSIE 203
Cdd:PRK12520 160 TATNAWVLLYRARMRLRECLD 180
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
147-199 |
4.70e-12 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 59.04 E-value: 4.70e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 528839879 147 LLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMR 199
Cdd:cd06171 3 RLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| PRK12545 |
PRK12545 |
RNA polymerase factor sigma-70; |
31-207 |
1.44e-11 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183584 [Multi-domain] Cd Length: 201 Bit Score: 61.51 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 31 DEPAIRAIVQRHnqrLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLE 110
Cdd:PRK12545 9 DDPAYLAQLRHD---LLRFARLQLRDADAAEDAVQEALAAAWSQAGRFAGQSAHKTWVFGILRNKLIDTLRARQRTVNLS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 111 EIDMQ---TTLRGGEVLQFPSSLSA-------TDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYL 180
Cdd:PRK12545 86 ALDAEldgEALLDRELFKDNGHWAAhakprpwPKPETILQQQQFWTLFETCLDHLPEQIGRVFMMREFLDFEIDDICTEL 165
|
170 180
....*....|....*....|....*...
gi 528839879 181 GIKPETAKTRLHRARKLMRQSI-EKQLS 207
Cdd:PRK12545 166 TLTANHCSVLLYRARTRLRTCLsEKGLT 193
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
145-198 |
2.04e-11 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 57.47 E-value: 2.04e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 528839879 145 RHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLM 198
Cdd:pfam08281 1 LEALLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
59-196 |
5.69e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 60.13 E-value: 5.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 59 EAEDVVQAVYVKAFTNLATFRGEAElSTWLTRITLNEALGRVRARKNTAGLEEIDmqtTLRGGEVLQfPSSLSATDPESE 138
Cdd:PRK12533 44 DADDVVQEACMRALRFFDSFRGDNA-RPWLLAIVRHTWYSEWRRRANAHEVAAPD---TLDDADSLD-DWQPAGEDPLAL 118
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 528839879 139 LSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARK 196
Cdd:PRK12533 119 LLRAEDVRLVNAALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARR 176
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
16-199 |
5.70e-11 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 61.11 E-value: 5.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 16 SAIPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNE 95
Cdd:PRK08241 2 PATAAAALLARAAAGDRDAFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLRAWRGYDRFEGRSSLRTWLYRIATNV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 96 ALGRVRARK--------NTAGLEEIDMQTTLRGGEVLQ-FPSSL---SATDPESELSRSQARHL-LEQAVDDLPDEFRAI 162
Cdd:PRK08241 82 CLDALEGRArrplptdlGAPAADPVDELVERPEVPWLEpYPDALldpAAADPAARVVARESVRLaFVAALQHLPPRQRAV 161
|
170 180 190
....*....|....*....|....*....|....*..
gi 528839879 163 FVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMR 199
Cdd:PRK08241 162 LILRDVLGWSAAEVAELLDTSVAAVNSALQRARATLA 198
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
38-203 |
9.33e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 58.41 E-value: 9.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 38 IVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEaELSTWLTRITLNEALGRVRARKN--TAGLEEidmq 115
Cdd:PRK12541 10 IYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGE-EIRPWLFTIAYNAFIDWYRKEKKykTTTIEE---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 116 ttlrggevLQFPSSLSATdpESELSRSQARHLLEqAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRAR 195
Cdd:PRK12541 85 --------FHLPNVPSTE--HEYFIKHEIASWLD-SLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGR 153
|
....*...
gi 528839879 196 KLMRQSIE 203
Cdd:PRK12541 154 KETKSIKE 161
|
|
| PRK12517 |
PRK12517 |
RNA polymerase sigma factor; Provisional |
37-205 |
3.14e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183569 [Multi-domain] Cd Length: 188 Bit Score: 57.39 E-value: 3.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 37 AIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLtrITLneaLGRVRARK------NTAGLE 110
Cdd:PRK12517 27 ALVKALHADIYRYAYWLCKDKHIAEDLVQETFLRAWRSLDSLKDEKAAKAWL--ITI---LRRENARRferkqfDLVDIE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 111 EIDMQTTLRGGevlqfpsslsaTDPESElsrsqaRHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTR 190
Cdd:PRK12517 102 DDSIEDDASHS-----------SEEEME------QEWLRRQIAKLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTR 164
|
170
....*....|....*
gi 528839879 191 LHRARKLMRQSIEKQ 205
Cdd:PRK12517 165 LFRARNQLKEALEKP 179
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
35-207 |
3.21e-10 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 57.20 E-value: 3.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 35 IRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEaELSTWLTRITLNEALGRVRARKN--TAGLEEI 112
Cdd:PRK09644 3 IEEIYKMYINDVYRYLFSLTKSHHAAEDLLQETFYRAYIYLEDYDNQ-KVKPWLFKVAYHTFIDFVRKEKKvsFVGTDEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 113 DmqttlrggevlqfpsSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLH 192
Cdd:PRK09644 82 E---------------AIQAESTEEYVVAKNSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLF 146
|
170
....*....|....*
gi 528839879 193 RARKLMRQSIEKQLS 207
Cdd:PRK09644 147 RGRKRLKALLKEEKS 161
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
44-203 |
3.37e-10 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 57.89 E-value: 3.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 44 QRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKntaglEEIDMQTTLRGGEV 123
Cdd:PRK12544 29 KQMIKFATLQLSDLHLAEDAVQEALIGALKNADSFAGRAAFKTWVFAILKNKIIDLLRQKK-----RHVSASSLLRDEEE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 124 LQFPSSL--------------SATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKT 189
Cdd:PRK12544 104 EEDFEELfdesghwqkderpqAWGNPEESLEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNV 183
|
170
....*....|....
gi 528839879 190 RLHRARKLMRQSIE 203
Cdd:PRK12544 184 LLYRARLRLRECLE 197
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
60-195 |
4.32e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 57.08 E-value: 4.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 60 AEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEIDMQTTLRggevlQF------------- 126
Cdd:PRK12530 34 AEDVVQEALVSAYKNADSFKGQSALKTWIFAILKNKIIDLIRYRKRFVNESELIEEDSPN-----SFfdekghwkpeyye 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528839879 127 PSSLSatDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRAR 195
Cdd:PRK12530 109 PSEWQ--EVENTVYKEEFWLIFEACLNHLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYRAR 175
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
21-204 |
5.02e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 56.75 E-value: 5.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 21 AELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFR-GEAELSTWLTRITLNEALGR 99
Cdd:PRK12514 7 EKLIVRVSLGDRDAFSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAvSGLSPMTWLITIARNHAIDR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 VRARKntAGLEEIDmqttlrggEVLQFpsSLSATDPESELSRSQARHLLEQAVDDLPDEfRAIFVLRE-VEGMSTEEAAS 178
Cdd:PRK12514 87 LRARK--AVAVDID--------EAHDL--ADPSPGPEAEVIAGDEGQRIDACLEELEKD-RAAAVRRAyLEGLSYKELAE 153
|
170 180
....*....|....*....|....*.
gi 528839879 179 YLGIKPETAKTRLHRARKLMRQSIEK 204
Cdd:PRK12514 154 RHDVPLNTMRTWLRRSLLKLRECLSR 179
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
38-106 |
7.82e-10 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 53.75 E-value: 7.82e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528839879 38 IVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGE--AELSTWLTRITLNEALGRVRARKNT 106
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPErgVSFSTWLYTIIRNAIIDYLRKQRRT 71
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
31-203 |
1.31e-09 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 55.47 E-value: 1.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 31 DEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATF-RGEAELSTWLTRITLNEALGRVRARKNtagl 109
Cdd:PRK09645 7 EAALMRALYDEHAAPLWRYALRLTGDRARAEDVVQETLLRAWQHPEVLaDTGRSARAWLFTVARNLVIDERRSARA---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 110 eeidmqttlRGGEVLQFPSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKT 189
Cdd:PRK09645 83 ---------RPVEGGDDVLGVPEQSAPDEVDRALDRLLVADALAQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKS 153
|
170
....*....|....
gi 528839879 190 RLHRARKLMRQSIE 203
Cdd:PRK09645 154 RLHYALRALRLALQ 167
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
37-202 |
1.33e-09 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 55.40 E-value: 1.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 37 AIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKntagleeidmqt 116
Cdd:TIGR02989 5 RLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTNFVAWARGIARNKVLNYRRKLG------------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 117 tlRGGEVLqFPSSLSATDPESELSRSQARHL----LEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLH 192
Cdd:TIGR02989 73 --RDRLVF-DDDLLEALAAEAEPTEAERLSDdrqaLEGCLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQ 149
|
170
....*....|
gi 528839879 193 RARKLMRQSI 202
Cdd:TIGR02989 150 RIRVSLRECV 159
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
12-200 |
2.03e-09 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 55.33 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 12 RQNISAIPDAELVSLAKQG---DEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWL 88
Cdd:PRK09640 2 RYDPRELNDEELVARVHVElfhVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 89 TRITLNEALGRVRARKNTAglEEIDMQTTlrggEVLQFPSSLSAtdPESELSRSQARHLLEQAVDDlpdefRAIFVLREV 168
Cdd:PRK09640 82 YSITYNECITQYRKERRKR--RLMDALSL----DPLEEASEEKA--PKPEERGGLDRWLVHVNPID-----REILVLRFV 148
|
170 180 190
....*....|....*....|....*....|..
gi 528839879 169 EGMSTEEAASYLGIKPETAKTRLHRARKLMRQ 200
Cdd:PRK09640 149 AELEFQEIADIMHMGLSATKMRYKRALDKLRE 180
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
39-200 |
2.64e-09 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 54.34 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 39 VQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLAT--FRGeaeLSTWLTRITLNEALG--RVRARKNtaglEEIDM 114
Cdd:PRK09642 1 MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNyqFRG---LKTWMARIATNHAIDykRKKAREN----EELSL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 115 QTTLRggevlqfPSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRA 194
Cdd:PRK09642 74 CKETE-------ENIKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRA 146
|
....*.
gi 528839879 195 RKLMRQ 200
Cdd:PRK09642 147 RKWIKK 152
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
27-212 |
4.29e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 54.46 E-value: 4.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 27 AKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNT 106
Cdd:PRK12546 1 KAPAKHRDPRDELVEHLPALRAFAISLTRNVAVADDLVQDTIVKAWTNFDKFQEGTNLRAWLFTILRNTFYSDRRKHKRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 107 agLEEIDmqttlrgGEVLQFPSSLSATDPESELSRSQArhlleqAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPET 186
Cdd:PRK12546 81 --VPDPE-------GVHAASLAVKPAHDGRLAMSDFRA------AFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGT 145
|
170 180 190
....*....|....*....|....*....|
gi 528839879 187 AKTRLHRARK----LMRQSIEKQLSGAFSA 212
Cdd:PRK12546 146 VKSRANRARArlaeLLQLEEGEELEMTDGA 175
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
127-205 |
1.88e-08 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 51.89 E-value: 1.88e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528839879 127 PSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQSIEKQ 205
Cdd:PRK09047 79 SADEGAESPADKLERAQVLQLIEEAIQKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKALEAK 157
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
17-194 |
4.17e-08 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 51.45 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 17 AIPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATF---RGEAElsTWLTRITL 93
Cdd:PRK13919 7 SLSDEALLALVARGEEEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFdprRGSAR--AWLLALAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 94 NEALGRVRARKntagLEEIDMQTTLRGGEVLQFPSslSATDPESELSRSQARHLLEQAVddlPDEFRAIFVLReVEGMST 173
Cdd:PRK13919 85 HAAVDHVRRRA----ARPQPLEPDEREPEAFDLPG--PGLDEEGHLDRTRLGRALKALS---PEERRVIEVLY-YQGYTH 154
|
170 180
....*....|....*....|.
gi 528839879 174 EEAASYLGIKPETAKTRLHRA 194
Cdd:PRK13919 155 REAAQLLGLPLGTLKTRARRA 175
|
|
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
11-207 |
4.81e-07 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 48.75 E-value: 4.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 11 RRQNISAIPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARA--IIRSDWeaEDVVQ--------AVYVKAFTNLATFRG 80
Cdd:PRK08295 2 RMKDYDELEDEELVELARSGDKEALEYLIEKYKNFVRAKARSyfLIGADR--EDIVQegmiglykAIRDYDKDKLSSFKS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 81 EAELS---------TWLTR---ITLNEALGRvrarkNTAGLEEIDMQTTLrggEVLqfpSSLSATDPESEL-SRSQARHL 147
Cdd:PRK08295 80 FAELCitrqiitaiKTANRqkhIPLNSYVSL-----DKPIYDEESDRTLL---DVI---SEAKVTDPEELIiSKEELEDI 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528839879 148 LEQAVDDLPDEFRAIFVLReVEGMSTEEAASYLGIKPETAKTRLHRA-RKLMRQSIEKQLS 207
Cdd:PRK08295 149 EEKIEELLSELEKEVLELY-LDGKSYQEIAEELNRHVKSIDNALQRVkRKLEKYLENREIT 208
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
60-196 |
5.13e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 48.42 E-value: 5.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 60 AEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKNTAGLEEIDMQTTLRggevlqfpsslsaTDPesel 139
Cdd:PRK12540 32 ADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRRREVEDADGSYAKTLK-------------SQP---- 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528839879 140 srSQARHL----LEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARK 196
Cdd:PRK12540 95 --GQNAHLefeeFRAALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARS 153
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
15-204 |
6.56e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 48.13 E-value: 6.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 15 ISAIPD------AELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFR-GEAELSTW 87
Cdd:PRK12534 1 MSAIPGhdddetGRLLTATAGGDRHAFEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDpSRARGLTW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 88 LTRITLNEALGRVRARKNTAGLEEIDMQTTLRGgevlqfpsslSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLRE 167
Cdd:PRK12534 81 LAMIARNKAIDHLRANAPQRRNVALDDAGELRA----------ADASPLERTERASTRRRIDHCLAELEPPRSELIRTAF 150
|
170 180 190
....*....|....*....|....*....|....*..
gi 528839879 168 VEGMSTEEAASYLGIKPETAKTRLHRARKLMRQSIEK 204
Cdd:PRK12534 151 FEGITYEELAARTDTPIGTVKSWIRRGLAKLKACLER 187
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
60-210 |
7.40e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 48.04 E-value: 7.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 60 AEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARKntaglEEIDMQTTLRGGEVLQFPSSLSATDPESel 139
Cdd:PRK12516 37 ADDLVQDTIMKAWAKQDHFEVGTNMKAWLFTILRNEFYSQMRKRG-----REVQDTDGMFTEQLAVHPSQYGTLDLQD-- 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528839879 140 srsqarhlLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQSIEKQLSGAF 210
Cdd:PRK12516 110 --------FRAALDQLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNRARQRLQEILQIEGEADY 172
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
31-202 |
9.55e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 47.74 E-value: 9.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 31 DEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRG--EAELSTWLTRITLNEALGRVRARK-NTA 107
Cdd:PRK12542 7 DYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSlnTQELKRYILRVAKNKAIDSYRKNKrHET 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 108 GLEEIDMQttlrggevlqfpsSLSATDPESElsRSQARHLLEQAVDDLPDEF----RAIFVLREVEGMSTEEAASYLGIK 183
Cdd:PRK12542 87 FLEEYERE-------------SIEAVDENIE--EWEKRKMSEVQIDTLLKELnesnRQVFKYKVFYNLTYQEISSVMGIT 151
|
170
....*....|....*....
gi 528839879 184 PETAKTRLHRARKLMRQSI 202
Cdd:PRK12542 152 EANVRKQFERARKRVQNMI 170
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
18-203 |
1.27e-06 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 47.24 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 18 IPDAELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDV---VQAVYVKAFTNLATFRGE-AELSTWLTRITL 93
Cdd:PRK06811 3 INEDNFIKELKKKNEKALEFIVDTYGNLVKKIVHKVLGTVNYSQLIeecVNDIFLSIWNNIDKFDEEkGSFKKWIAAISK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 94 NEALGRVRARKNTAGLEEIDMQTTLrggevlqfpsslSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMST 173
Cdd:PRK06811 83 YKAIDYKRKLTKNNEIDSIDEFILI------------SEESIENEIILKENKEEILKLINDLEKLDREIFIRRYLLGEKI 150
|
170 180 190
....*....|....*....|....*....|
gi 528839879 174 EEAASYLGIKPETAKTRLHRARKLMRQSIE 203
Cdd:PRK06811 151 EEIAKKLGLTRSAIDNRLSRGRKKLQKNKL 180
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
20-116 |
1.92e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 46.69 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 20 DAELVSLAkQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATF---RGEAElsTWLTRITLNEA 96
Cdd:PRK12537 11 EACLLACA-RGDRRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFdpaRGSAR--GWIYSVTRHLA 87
|
90 100
....*....|....*....|
gi 528839879 97 LGRVRARKNTAGLEEIDMQT 116
Cdd:PRK12537 88 LNVLRDTRREVVLDDDAEET 107
|
|
| PRK06930 |
PRK06930 |
positive control sigma-like factor; Validated |
134-206 |
2.81e-06 |
|
positive control sigma-like factor; Validated
Pssm-ID: 180757 [Multi-domain] Cd Length: 170 Bit Score: 46.26 E-value: 2.81e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528839879 134 DPESELSrSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQSIEKQL 206
Cdd:PRK06930 95 EPESVIS-EWDKIRIEDALSVLTEREKEVYLMHRGYGLSYSEIADYLNIKKSTVQSMIERAEKKIARQINESL 166
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
60-200 |
7.62e-06 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 44.77 E-value: 7.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 60 AEDVVQAVYVKAFTNLATFRGEaELSTWLTRITLNEALGRVRaRKNTAGLEEIdmqttlrggEVLQFPSSLSATDPESEL 139
Cdd:PRK12527 22 AEDVAHDAYLRVLERSSSAQIE-HPRAFLYRTALNLVVDRHR-RHRVRQAEPL---------EVLDEEERLHSPSPQTRL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528839879 140 SRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRA----RKLMRQ 200
Cdd:PRK12527 91 DLGQRLALLQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAmkhcRVRMRQ 155
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
30-196 |
2.48e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 43.50 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 30 GDEPAIRAIVQ---RHNQRLFRtaRAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWL---TRITLNEALgRVRAR 103
Cdd:PRK12536 18 GDAAAYRQFLSelaAHLRGFLR--RRLPQLPDEVEDLVQEILLAVHNARHTYRADQPLTAWVhaiARYKLMDFL-RSRAR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 104 KNtAGLEEIDMQTTLrggevlqfpssLSATDPESelsrSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIK 183
Cdd:PRK12536 95 RE-ALHDPLDDESEL-----------FATSDDEA----AEARRDLGKLLEQLPDRQRLPIVHVKLEGLSVAETAQLTGLS 158
|
170
....*....|...
gi 528839879 184 PETAKTRLHRARK 196
Cdd:PRK12536 159 ESAVKVGIHRGLK 171
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
151-200 |
3.47e-05 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 40.10 E-value: 3.47e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 528839879 151 AVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKLMRQ 200
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKLRK 50
|
|
| PRK12539 |
PRK12539 |
RNA polymerase sigma factor SigF; |
22-202 |
4.05e-05 |
|
RNA polymerase sigma factor SigF;
Pssm-ID: 237132 [Multi-domain] Cd Length: 184 Bit Score: 42.79 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 22 ELVSLAKQGDEPAIRAIVQRHNQRL---FRTA-RAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWL---TRITLN 94
Cdd:PRK12539 10 ALMLASLDGDAAAHRALLERLSGHLrayYKGKlARIGRGAEEAEDLVQEALMAIHTRRHTYDPEQPLTPWVyaiARYKLI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 95 EALGRVRARKNTAGLEEIDmqttlrggevlqfpsSLSATDPESELSRSqarHLLEQAVDDLPDEFRAIFVLREVEGMSTE 174
Cdd:PRK12539 90 DHLRRTRASLADVPIDDAD---------------ELVAHDDHAAVEST---LDLGRLLARLPEKMRLAIQAVKLEGLSVA 151
|
170 180
....*....|....*....|....*...
gi 528839879 175 EAASYLGIKPETAKTRLHRARKLMRQSI 202
Cdd:PRK12539 152 EAATRSGMSESAVKVSVHRGLKALAALI 179
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
50-195 |
6.54e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 42.17 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 50 ARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVRARkntaGLEEIDMQTTlrggevlqFPSS 129
Cdd:PRK12547 23 AVSLSSKHDKAEDLVQDTLMKAWAKQDSFEMGTNLKAWLFTILRNEFYSQMRKR----GREVQDSDGV--------FTAR 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528839879 130 LSATDPESELSRSQArhlLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRAR 195
Cdd:PRK12547 91 VAVHPAQYGSLDLQD---FKKALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRAR 153
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
42-184 |
6.90e-05 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 41.98 E-value: 6.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 42 HNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELStWLTRITLNEALGRVRarkntagleEIDMQTTLRGG 121
Cdd:PRK07037 7 NRSMLVKIAARIVGCRSRAEDVVQDAFVKLVEAPNQDAVKQPVA-YLFRIVRNLAIDHYR---------RQALENKYHGD 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528839879 122 EVLQFPSSLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKP 184
Cdd:PRK07037 77 EEDGLDVPSPEASPEAALINRDTLRHVADALSELPARTRYAFEMYRLHGETQKDIARELGVSP 139
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
21-194 |
1.21e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 41.61 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 21 AELVSLAKQGDE-----------PAIRAIVQRhnqrlfRTARAIIRSDwEAEDVVQAVYVKAFTNLATFRGEAELSTWLT 89
Cdd:PRK12512 10 TDLMRSANAGDAaayrrllkavtPVLRAAARR------GLARAGQPAD-QAEDIVQEILLAVHLKRHTWDPGAPFAPWLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 90 RITLN---EALGRvRARKNTAGLEEidmqttlrggevlqFPSSLSATDPESELSRSQARHLLEQavddLPDEFRAIFVLR 166
Cdd:PRK12512 83 AIARNkliDALRR-RGRRVFVDIDD--------------FAETLPAEPATETLPAGDVGRHLET----LPPRQRDVVQSI 143
|
170 180
....*....|....*....|....*...
gi 528839879 167 EVEGMSTEEAASYLGIKPETAKTRLHRA 194
Cdd:PRK12512 144 SVEGASIKETAAKLSMSEGAVRVALHRG 171
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
42-233 |
1.48e-04 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 41.83 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 42 HNQRLFRTARAIIRSDWEAEDVVQAVYVKAftNLATFRGEAELSTWLTRITLNEALGR---VRARKNTagleeidmqttl 118
Cdd:PRK09636 13 LRPHLLSVAYRMLGSVADAEDIVQEAWLRW--NNADRAQIRDPRAWLTRVVTRLCLDRlrsARHRRET------------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 119 RGGEVLQFPSSLSATDP-ESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIKPETAKTRLHRARKL 197
Cdd:PRK09636 79 YVGPWLPEPVVEELDDPlEAVVAAEDLSLALMLALERLSPLERAAFLLHDVFGVPFDEIASTLGRSPAACRQLASRARKH 158
|
170 180 190
....*....|....*....|....*....|....*.
gi 528839879 198 MRQSiekqlsgafSALFPFDGARCASMGDRVIAALR 233
Cdd:PRK09636 159 VRAA---------RPRFPVSDEEGAELVEAFFAALA 185
|
|
| Sigma70_ECF |
pfam07638 |
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the ... |
21-200 |
2.11e-04 |
|
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Pssm-ID: 254323 [Multi-domain] Cd Length: 185 Bit Score: 40.86 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 21 AELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYV-KAFTNLAtfrGEAELSTWLTRITLNEALGR 99
Cdd:pfam07638 5 TQLLQQVKDGDAAATEQLLPLVYDELRRLAGSKLQNERRGHTLQPTALVhEAFVRLV---DTEDFPDWSGRGHFFAAAAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 100 VRARKNTAGLEEidMQTTLRGGEVLQFpsSLSATDPESELSRSQARHLLEQAVD---DLPDEFRAIFVLREVEGMSTEEA 176
Cdd:pfam07638 82 AMRRILIDHARR--RQRQKRGGDVQRR--ELDEVVDNGDSPNPDLLLDLDEALEqlfSLSPRQARLVELRFFAGLSNDEI 157
|
170 180
....*....|....*....|....
gi 528839879 177 ASYLGIKPETAKTRLHRARKLMRQ 200
Cdd:pfam07638 158 AERLGVSERTVERNWALARAWLHR 181
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
15-195 |
2.83e-04 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 40.41 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 15 ISAIPDAELVS----LAKQGDEPAIRAIVQRHNQRLFRTArAIIRSDWEAEDVVQAVYVKAFTNLATFRGEAELSTWL-- 88
Cdd:PRK09649 2 TATASDDEAVTalalSAAKGNGRALEAFIKATQQDVWRFV-AYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLla 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 89 -TRITLNEALGRVRARkntagleeidmqttlrggevlqfPSSLSATDPESELSRSQARHLLEQAVD------DLPDEFRA 161
Cdd:PRK09649 81 iARHVVADHIRHVRSR-----------------------PRTTRGARPEHLIDGDRHARGFEDLVEvttmiaDLTTDQRE 137
|
170 180 190
....*....|....*....|....*....|....
gi 528839879 162 IFVLREVEGMSTEEAASYLGIKPETAKTRLHRAR 195
Cdd:PRK09649 138 ALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR 171
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
23-204 |
3.75e-04 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 39.95 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 23 LVSLAKQGDEPAIRAIVQRHNQRLFRTARAII----RSDWEAEDVVQAVYVKAFTNLATFRGE-AELSTWLTRITLN--- 94
Cdd:PRK09648 14 LVAEAVAGDRRALREVLEIIRPLVVRYCRARLggveRPGLSADDVAQEVCLAVITALPRYRDQgRPFLAFVYGIAAHkva 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 95 EALgRVRARKNTAGLEEIdmqttlrggevlqfPSSLSATD-PESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMST 173
Cdd:PRK09648 94 DAH-RAAGRDKAVPTEEV--------------PERPSDDAgPEERALRSESSNRMRELLDTLPEKQREILILRVVVGLSA 158
|
170 180 190
....*....|....*....|....*....|.
gi 528839879 174 EEAASYLGIKPETAKTRLHRARKLMRQSIEK 204
Cdd:PRK09648 159 EETAEAVGSTPGAVRVAQHRALARLRAEIEA 189
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
22-196 |
4.03e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 40.27 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 22 ELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDwEAEDVVQAVYVKAFTNLATFRGEAELSTWLTRITLNEALGRVR 101
Cdd:PRK12535 14 DLALAAGRGDRAALTEFIRETQDDVWRLLAHLGGHD-IADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDNIR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 102 ---ARKNTAGLEEIDmqttlrggevlqfpssLSATDPESELSRSQARHLLEQA-VDDLPDEFRAIFVLREVEGMSTEEAA 177
Cdd:PRK12535 93 hdmARPRKSATEYED----------------AAATTASNETTGSWSEWIDVRTlIDALPPERREALILTQVLGYTYEEAA 156
|
170
....*....|....*....
gi 528839879 178 SYLGIKPETAKTRLHRARK 196
Cdd:PRK12535 157 KIADVRVGTIRSRVARARA 175
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
129-204 |
1.92e-03 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 38.27 E-value: 1.92e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528839879 129 SLSATDPESELSRSQARHLLEQAVDDLPDEFRAIFVLREVEGMSTEEAASYLGIkpeTAKT--RLH-RARKLMRQSIEK 204
Cdd:COG1191 161 LLESGDPEEELEHEELREALAEAIEQLPERERLVLSLYYFEELTLKEIAEVLGV---SESRvsRLHkKALARLREYLKE 236
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
21-191 |
2.91e-03 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 37.73 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 21 AELVSLAKQGDEPAIRAIVQRHNQRLFRTARAIIRSDWEAEDVVQAVYVKAFTNLATF---RGEAelSTWLTRITLNEAL 97
Cdd:PRK09646 18 DALLRRVARGDQDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFdpaRGSA--LAWLLTLAHRRAV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528839879 98 GRVRARKNTAGLEeidmqtTLRGGEVLQFPSSLSATDPESELSRSQARHLLeqavDDLPDEFRAIFVLREVEGMSTEEAA 177
Cdd:PRK09646 96 DRVRSEQAASQRE------VRYGARNVDPAFDQVAEEVEARLERERVRDCL----DALTDTQRESVTLAYYGGLTYREVA 165
|
170
....*....|....
gi 528839879 178 SYLGIKPETAKTRL 191
Cdd:PRK09646 166 ERLAVPLGTVKTRM 179
|
|
| |
