NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499595252|ref|WP_011275986|]
View 

MULTISPECIES: TM2 domain-containing protein [Staphylococcus]

Protein Classification

TM2 domain-containing protein( domain architecture ID 10006330)

TM2 domain-containing protein similar to Bacillus subtilis membrane protein YozV

Gene Ontology:  GO:0005886

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 1-64 6.88e-20

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


:

Pssm-ID: 441888  Cd Length: 79  Bit Score: 74.95  E-value: 6.88e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499595252  1 MEVNKIIYIVLAFFLGGFGVHKFYAGKTMSGFLHLAFFWTGIPHIIAIISGVLTLLRPADENGN 64
Cdd:COG2314   6 SEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNR 69
 
Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 1-64 6.88e-20

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


Pssm-ID: 441888  Cd Length: 79  Bit Score: 74.95  E-value: 6.88e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499595252  1 MEVNKIIYIVLAFFLGGFGVHKFYAGKTMSGFLHLAFFWTGIPHIIAIISGVLTLLRPADENGN 64
Cdd:COG2314   6 SEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNR 69
TM2 pfam05154
TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a ...
 1-52 4.28e-10

TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.


Pssm-ID: 428337  Cd Length: 50  Bit Score: 49.41  E-value: 4.28e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 499595252   1 MEVNKIIYIVLAFFLGGFGVHKFYAGKTMSGFLHLAFFwtGIPHIIAIISGV 52
Cdd:pfam05154  1 SGKSKLIAYLLWLFLGGFGVHRFYLGKTGTGILYLLTF--GGLGIWWLIDLI 50
 
Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 1-64 6.88e-20

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


Pssm-ID: 441888  Cd Length: 79  Bit Score: 74.95  E-value: 6.88e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499595252  1 MEVNKIIYIVLAFFLGGFGVHKFYAGKTMSGFLHLAFFWTGIPHIIAIISGVLTLLRPADENGN 64
Cdd:COG2314   6 SEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNR 69
TM2 pfam05154
TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a ...
 1-52 4.28e-10

TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.


Pssm-ID: 428337  Cd Length: 50  Bit Score: 49.41  E-value: 4.28e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 499595252   1 MEVNKIIYIVLAFFLGGFGVHKFYAGKTMSGFLHLAFFwtGIPHIIAIISGV 52
Cdd:pfam05154  1 SGKSKLIAYLLWLFLGGFGVHRFYLGKTGTGILYLLTF--GGLGIWWLIDLI 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH