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Conserved domains on  [gi|498541032|gb|AGL50793|]
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Multiple sugar ABC transporter, membrane-spanning permease protein MsmF [Thermotoga maritima MSB8]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-287 2.63e-79

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 242.35  E-value: 2.63e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   2 SLKRREARLGWGLVSIYLLYTAIFWGYPFVWMLILAFSRWKFVG-SPKFVGLQNFFRIFEDKIFWRVFLNTMNFLSYFIP 80
Cdd:COG1175   11 RRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVP 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  81 MVFIASILFAIALNRMKYFKTFVTLSFLVAYVSSGVAYSIMFQRIFS-ETGPINRFLyNAFGIT-IPWFTDPQLAMLTIA 158
Cdd:COG1175   91 LQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALL-GALGLEpINWLGDPSLALPAVI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 159 IMVTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGPM 238
Cdd:COG1175  170 IVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPG 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 498541032 239 NRTLTFMLYMYNTAFQRINPSYATTIAIMTALINFSIVIFIRKVIEKEV 287
Cdd:COG1175  250 NSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-287 2.63e-79

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 242.35  E-value: 2.63e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   2 SLKRREARLGWGLVSIYLLYTAIFWGYPFVWMLILAFSRWKFVG-SPKFVGLQNFFRIFEDKIFWRVFLNTMNFLSYFIP 80
Cdd:COG1175   11 RRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVP 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  81 MVFIASILFAIALNRMKYFKTFVTLSFLVAYVSSGVAYSIMFQRIFS-ETGPINRFLyNAFGIT-IPWFTDPQLAMLTIA 158
Cdd:COG1175   91 LQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALL-GALGLEpINWLGDPSLALPAVI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 159 IMVTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGPM 238
Cdd:COG1175  170 IVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPG 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 498541032 239 NRTLTFMLYMYNTAFQRINPSYATTIAIMTALINFSIVIFIRKVIEKEV 287
Cdd:COG1175  250 NSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
malF PRK10999
maltose ABC transporter permease MalF;
46-254 4.40e-20

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 89.63  E-value: 4.40e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  46 SPKF---VGLQNFFRIFED----KIFWRVFLNTMNF------LSYFIPMVFiASILFAIALNRMKYFKTFVTLSFLVAYV 112
Cdd:PRK10999 258 SPGFtvtIGWKNFTRVFTDegiqKPFIAIFIWTVVFslltvvLTVAVGMVL-ACLVQWEALKGKAVYRVLLILPYAVPSF 336

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 113 SSGVAYSIMFQRIFSEtgpINRFLYNAFGITIPWFTDPQLAMLTIAIMVTWkfVGY-YGLILYSG-LQAIPKSIFEAAEL 190
Cdd:PRK10999 337 ISILIFKGLFNQSFGE---INMMLSALFGIKPAWFSDPTLAKTMILIVNTW--LGYpYMMILCMGlLKAIPDDLYEASAM 411

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 498541032 191 DGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGP-MNRTLT-------FMLYMYNTAFQ 254
Cdd:PRK10999 412 DGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPdMIGTTTpagytdlLVSYTYRIAFE 483
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 142-280 1.43e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.23  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  142 ITIPWFTDPQLAMLTIAIMVTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNL 221
Cdd:pfam00528  40 VVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 498541032  222 SFGIFTEPYMITGGGPMNRTLTFMLYMYNTAFqriNPSYATTIAIMTALINFSIVIFIR 280
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPE---IQGPVLAAALILLLLNLLVDILQR 175
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 135-273 2.45e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 55.75  E-value: 2.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 135 FLYNAFGITIPWFTDPQLAMLTIAIMVTWkFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTV 214
Cdd:cd06261   55 LLVLLFGVLLGWGILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTG 133

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 498541032 215 LILAVNLSFGIFTEPYMITGGGPMnrTLTFMLYMYNTAFQRINPSYATTIAIMTALINF 273
Cdd:cd06261  134 LVLAFARALGEFALVSFLGGGEAP--GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 81-273 2.90e-09

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 56.25  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   81 MVFIASILFAIALNRM-----KYFKTFVTLSFLVAYVSSGVAYSIMFQRIfsetGPINRFLYNAfGItipwftdpQLAML 155
Cdd:TIGR01581  36 LAVIIGIPTAYVLARVrfplkKLLDTLLDLPMVLPPLVAGLALLLLFGRN----GLLGPYLEAA-GI--------QVIFS 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  156 TIAIMVTWKFVG--YYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMIT 233
Cdd:TIGR01581 103 TLGVVLAQTFVAspYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFA 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 498541032  234 GGGPMN-RTLTFMLYmynTAFQRINPSYATTIAIMTALINF 273
Cdd:TIGR01581 183 GSIQGKtRTLPLAIY---LNIQSDNIEAAVASALLLLVIAF 220
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-287 2.63e-79

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 242.35  E-value: 2.63e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   2 SLKRREARLGWGLVSIYLLYTAIFWGYPFVWMLILAFSRWKFVG-SPKFVGLQNFFRIFEDKIFWRVFLNTMNFLSYFIP 80
Cdd:COG1175   11 RRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVP 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  81 MVFIASILFAIALNRMKYFKTFVTLSFLVAYVSSGVAYSIMFQRIFS-ETGPINRFLyNAFGIT-IPWFTDPQLAMLTIA 158
Cdd:COG1175   91 LQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALL-GALGLEpINWLGDPSLALPAVI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 159 IMVTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGPM 238
Cdd:COG1175  170 IVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPG 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 498541032 239 NRTLTFMLYMYNTAFQRINPSYATTIAIMTALINFSIVIFIRKVIEKEV 287
Cdd:COG1175  250 NSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 19-285 6.80e-37

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 133.29  E-value: 6.80e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  19 LLYTAIFWGYPfVWMLILAFSRWKFV----GSPkFVGLQNFFRIFEDKIFWRVFLNT--MNFlsYFIPMVFIASILFAIA 92
Cdd:COG4209   37 LIYLLIFSYLP-MYGIVIAFKDYNPFkgifGSP-WVGLKNFKFLFSSPDFWRVLRNTllISL--LKLVFGFPLPIILALL 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  93 LN--RMKYFKTFV-TLSFLVAYVSSGVAYSIMFQRIFSETGPINRFLyNAFGI-TIPWFTDPQLAMLTIAIMVTWKFVGY 168
Cdd:COG4209  113 LNelRSKRFKKTVqTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLL-RALGGePINFLTEPKYFRPIYVFSGIWKEAGW 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 169 YGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAV----NLSFGIFtepYMITGGGPMNRTLTF 244
Cdd:COG4209  192 GSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIgnilNVGFEQI---YLLYNPLNYSTSDVI 268

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 498541032 245 MLYMYNTAFQRINPSYATTIAIMTALINFSIVIFIRKVIEK 285
Cdd:COG4209  269 DTYVYRIGLQNGDYSYATAVGLFKSVVGLILVLIANKIAKK 309
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-286 4.85e-25

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 100.99  E-value: 4.85e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   1 MSLKRREARLGWGLVSIYLLYTAIFWGYPFVWMLILAFSRWKFVGSPKFV-GLQNFFRIFEDKIFWRVFLNT--MNFLSY 77
Cdd:COG1176    1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGfTLENYARLFTDPLYLKVLLRTlwIALLTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  78 FIPMVFiaSILFAIALNRMKY-FKTFVTLSFLVAYVSSGVAYSIMFQRIFSETGPINRFLYnAFGITipwftDPQLAML- 155
Cdd:COG1176   81 LICLLL--GYPIAYFLARAPPrWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLL-ALGLI-----DEPLRLLy 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 156 ---TIAIMVTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMI 232
Cdd:COG1176  153 tefAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 498541032 233 tgGGPmnRTLTFMLYMYNTAFQRINPSYATTIAIMTALINFSIVIFIRKVIEKE 286
Cdd:COG1176  233 --GGG--KVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRR 282
malF PRK10999
maltose ABC transporter permease MalF;
46-254 4.40e-20

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 89.63  E-value: 4.40e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  46 SPKF---VGLQNFFRIFED----KIFWRVFLNTMNF------LSYFIPMVFiASILFAIALNRMKYFKTFVTLSFLVAYV 112
Cdd:PRK10999 258 SPGFtvtIGWKNFTRVFTDegiqKPFIAIFIWTVVFslltvvLTVAVGMVL-ACLVQWEALKGKAVYRVLLILPYAVPSF 336

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 113 SSGVAYSIMFQRIFSEtgpINRFLYNAFGITIPWFTDPQLAMLTIAIMVTWkfVGY-YGLILYSG-LQAIPKSIFEAAEL 190
Cdd:PRK10999 337 ISILIFKGLFNQSFGE---INMMLSALFGIKPAWFSDPTLAKTMILIVNTW--LGYpYMMILCMGlLKAIPDDLYEASAM 411

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 498541032 191 DGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGP-MNRTLT-------FMLYMYNTAFQ 254
Cdd:PRK10999 412 DGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPdMIGTTTpagytdlLVSYTYRIAFE 483
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
14-278 9.08e-19

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 83.72  E-value: 9.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  14 LVSIYLLYTAIFWGYPFVWMLILAFSRWKFVG-SPKFVGLQNFFRIFEDKIFWRVFLNTMNFLSYFIPMVFIASILFAIA 92
Cdd:PRK10561   2 LVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  93 LNRM----KYFKTFVTLSFLVAYVSSGVAYSIMFQrifSETGPINRFLyNAFGITIPWFTDPQLAMLTIAIMVTWKFVGY 168
Cdd:PRK10561  82 VDYVvrgsRFYQTLMLLPYAVAPAVAAVLWIFLFN---PGRGLITHFL-AEFGYDWNHAQNSGQAMFLVVFASVWKQISY 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 169 YGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPaiVTVLILAVNLSFGIF-TEPYM--ITGGGPMNRTLTFM 245
Cdd:PRK10561 158 NFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP--VSFFLLVVNLVYAFFdTFPVIdaATSGGPVQATTTLI 235

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 498541032 246 LYMYNTAFQRIN--PSYATTIAIMTALINFSIVIF 278
Cdd:PRK10561 236 YKIYREGFTGLDlsSSAAQSVVLMFLVIVLTVVQF 270
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-281 2.56e-18

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 82.45  E-value: 2.56e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   1 MSLKRREARLGWGLVSIYLLYT--AIFWGYPFVWMLILAFSRWKFVGS------PKFVGLQNFFRIFEDKIFWRVFLNT- 71
Cdd:COG0395    1 MSATARRRRRRLGRILLYLLLIllALLFLFPLYWMVVTSFKPPAEIFSgppsllPSEFTLENYRAAFTDGPFGRYLLNSl 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  72 -MNFLSYFIPMVFiaSILFAIALNRMKY-FKTFVTLSFLVAYVSSGVAYSIMFQRIFSETGPINRFLynafGITIPWftd 149
Cdd:COG0395   81 iVAVVSTVLSLLL--SSLAAYALARFRFrGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYW----GLILPY--- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 150 pqlAMLTIAIMVtwkfvgyygLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEP 229
Cdd:COG0395  152 ---LAFGLPFGI---------FLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWP 219

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 498541032 230 YMITgGGPMNRTLTFMLYMYNTAFQrINPSYATTIAIMTALINFSIVIFIRK 281
Cdd:COG0395  220 LILL-TSPDLRTLPVGLASFQGQYG-TDWGLLMAAAVIATLPVLILFLFLQR 269
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
4-282 4.86e-18

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 83.67  E-value: 4.86e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   4 KRREARLGWGLVSIYLLYTAIFWGYPFVWMLILAFsrwkfvgspkFVGLQNFFRIFEDKIFWRVFLNT--MNFLSYFIpm 81
Cdd:COG1178    2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAF----------TDGLANFWALLSDPYLWRALGNTllLALLVTLL-- 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  82 VFIASILFAIALNRMKY-FKTFVTLSFLVAYVSSGVAYSIMFQRIFSETGPINRFLYNAFGITIPWFTDPQLamltIAIM 160
Cdd:COG1178   70 SLLLGVPLAWLLARTDFpGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPDIYGLGG----IILV 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 161 VTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMItggGPMNR 240
Cdd:COG1178  146 LVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL---GGGYT 222

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 498541032 241 TLTfmLYMYNTAFQRINPSYATTIAIMTALINFSIVIFIRKV 282
Cdd:COG1178  223 TLT--TAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRL 262
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 8-279 3.24e-15

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 73.61  E-value: 3.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   8 ARLGWGLVSIYLLYTAIFWGYPFVWMLILAFS-RWKFVGSPKFVGLQNFFRIFEDKIFWRVFLNTMN--FLSYFIPMVFi 84
Cdd:COG1177    2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNdSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLiaLLSTLLATVL- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  85 aSILFAIALNRMKY-FKTFVTLSFLVAYVSSGVAYSIMFQRIFSETGPINRFlynaFGITIPWFTdpqlamLTIAIMVtw 163
Cdd:COG1177   81 -GTPAALALARYRFrGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGL----WGLILAHVV------FTLPFVV-- 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 164 kfvgyygLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGpmnrTLT 243
Cdd:COG1177  148 -------LVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPG----VTT 216

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 498541032 244 FMLYMYNTAFQRINPSYAttiAIMTALINFSIVIFI 279
Cdd:COG1177  217 LPVYIYSMIRRGISPEIN---ALSTLLILLSLLLLL 249
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 11-282 9.82e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 63.62  E-value: 9.82e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  11 GWGLVSIY-LLYTAIFWGYPFVWMLILAFSrwkfvgspkfVGLQNFFRIFEDKIFWRVFLNT--MNFLSYFIPMVFiaSI 87
Cdd:COG0555    8 GFGLTLGLtLLYLSLIVLLPLAALVLKAAG----------LGWAEFWAVLTSPRVLAALKLSlgTALIAALINLVF--GL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  88 LFAIALNRMKY-----FKTFVTLSFLVAYVSSGVAYSImfqrIFSETGPINRFLyNAFGITIPwFTdpqlamlTIAIMVT 162
Cdd:COG0555   76 PLAWVLVRYRFpgkrlVDALVDLPFALPTAVAGIALLL----LFGPNGWLGQLL-APLGIKVA-FT-------PLGIVLA 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 163 WKFVG--YYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGPMnR 240
Cdd:COG0555  143 QTFVSlpFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPM-K 221

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 498541032 241 TLTFMLYMYnTAFQRINPSYATTIAIMTALINFSIVIFIRKV 282
Cdd:COG0555  222 TEILPLLIY-LKLEEGDYAGATAIALVLLLISFLLLLLINLL 262
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-218 1.07e-11

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 63.63  E-value: 1.07e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   1 MSLKRREaRLGWGLVSIYLLYTAIFWGYPFVWMLILAFSRWKFVGS----PKFVGLQNFFRIFEDKIFWRVFLNTM--NF 74
Cdd:COG3833    5 KSRKRRR-RLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSssliPENFTLENYKKLFTETPFLRWFLNSLivAV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  75 LSYFIPMVFIASIlfAIALNRMKY-FKTFVTLSFLVA----YVSSGVAYSIMFQRIfsetGPINRFLynafGITipwftd 149
Cdd:COG3833   84 VTAIISVFLAALA--AYAFSRFRFkGRKAGLLALLLLqmfpAFLALVALYLLLSAL----GLLNTLL----GLI------ 147

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 150 pqLAMLTIAI-MVTWKFVGYYglilysglQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILA 218
Cdd:COG3833  148 --LVYLGGAIpFNTWLMKGYF--------DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLS 207
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 142-280 1.43e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.23  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  142 ITIPWFTDPQLAMLTIAIMVTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNL 221
Cdd:pfam00528  40 VVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 498541032  222 SFGIFTEPYMITGGGPMNRTLTFMLYMYNTAFqriNPSYATTIAIMTALINFSIVIFIR 280
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPE---IQGPVLAAALILLLLNLLVDILQR 175
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-285 2.29e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 57.86  E-value: 2.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   9 RLGWGLVSIYLLYTAIFWGYPFVWMLILAFSRwkfvGSPKFVGLQNFFRIFEDKIFWRVFLNT--MNFLSYFIPMVFIAS 86
Cdd:COG1178  285 RWRWLALALCLLLVLLGLLLPLLALLLWSLTK----ALDDNLTLDNYRFVLLDPSLLRALLNSllLALLAALLAVLLALL 360

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  87 ILFAIALNRMKYFKTFVTLSFLvAYVSSGVAYSIMFQRIFSETGPINrfLYNAFGITIpwftdpqLAMLTIAIMVTWKfv 166
Cdd:COG1178  361 LAYLVRRRRGRLARLLDRLAML-PYAVPGIVLGLGLLLLFNRPLPLL--LYGTLAILV-------LAYVVRFLPFALR-- 428

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 167 gyyglILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGpmNRTLTFML 246
Cdd:COG1178  429 -----SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG--FETLAVLI 501

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 498541032 247 YmynTAFQRINPSYATTIAIMTALINFSIVIFIRKVIEK 285
Cdd:COG1178  502 Y---QLASSGRYGEAAALALLLVLVSLLPVLLLERLLGR 537
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 135-273 2.45e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 55.75  E-value: 2.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 135 FLYNAFGITIPWFTDPQLAMLTIAIMVTWkFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTV 214
Cdd:cd06261   55 LLVLLFGVLLGWGILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTG 133

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 498541032 215 LILAVNLSFGIFTEPYMITGGGPMnrTLTFMLYMYNTAFQRINPSYATTIAIMTALINF 273
Cdd:cd06261  134 LVLAFARALGEFALVSFLGGGEAP--GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 81-273 2.90e-09

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 56.25  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   81 MVFIASILFAIALNRM-----KYFKTFVTLSFLVAYVSSGVAYSIMFQRIfsetGPINRFLYNAfGItipwftdpQLAML 155
Cdd:TIGR01581  36 LAVIIGIPTAYVLARVrfplkKLLDTLLDLPMVLPPLVAGLALLLLFGRN----GLLGPYLEAA-GI--------QVIFS 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  156 TIAIMVTWKFVG--YYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMIT 233
Cdd:TIGR01581 103 TLGVVLAQTFVAspYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFA 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 498541032  234 GGGPMN-RTLTFMLYmynTAFQRINPSYATTIAIMTALINF 273
Cdd:TIGR01581 183 GSIQGKtRTLPLAIY---LNIQSDNIEAAVASALLLLVIAF 220
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 9-238 7.28e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.06  E-value: 7.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032    9 RLGWGLVSIYLLYTAIFWGYPFVWMLILAFsrwkFVGSPKFVGLQNFFRIFEDKIFWRVFLNTMNFLSYFIPMVFIASIL 88
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSV----YDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   89 FAIALNRMK-YFKTFVTLSFLVAYVSSGVAYSIMFQRIFSETGpINRFLYNAFGITIPWFTdpqlamltIAIMVTWKFVG 167
Cdd:TIGR03262  77 FAYALTRSRiPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQG-LLKGLLGGFSIYGFWGI--------VIGEVFYTFPH 147

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 498541032  168 YYgLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGPM 238
Cdd:TIGR03262 148 AL-MILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNV 217
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 14-279 7.23e-06

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 46.58  E-value: 7.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   14 LVSIYLLYTAIFWGYPFVWMLILAFSRwkfvgspkfvGLQNFFRIFEDKIFWRVFLNTMNFLSYFIPMVFIASILFAIAL 93
Cdd:TIGR00969  18 SLGIALLYVFLILILPVAALFVQAFSK----------GLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   94 NRMKY-----FKTFVTLSFLVAYVSSGVAYSImfqrIFSETGPINRFLyNAFGITIPwFTDPQLAMLTIaiMVTWKFVGY 168
Cdd:TIGR00969  88 TRYQFpgrklLDALIDLPFALSPVVAGLTLAL----LYGSNGWLGSWL-ASFGIQII-FTWPGMALAMI--FVSLPFVVR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  169 yglILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGPMnRTLTFMLYM 248
Cdd:TIGR00969 160 ---EVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPG-KTLTLPLLI 235

                         250       260       270
                  ....*....|....*....|....*....|.
gi 498541032  249 YNtAFQRINPSYATTIAIMTALINFSIVIFI 279
Cdd:TIGR00969 236 EE-RLEQYDYPGAYVIAAVLLLVSLVTLFLI 265
cysT CHL00187
sulfate transport protein; Provisional
 97-238 1.15e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 45.39  E-value: 1.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  97 KYFKTFVTLSFLVAYVSSGVAYSImfqrIFSETGPINRFLyNAFGITIPwFTdpQLAMLTIAIMVTWKFVGYyglILYSG 176
Cdd:CHL00187  91 RLLDAAVDLPFALPTSVAGLTLAT----VYGDNGWIGHLL-SHLGIQIV-FT--KLGVLLAMIFVSFPFVVR---TIQPV 159

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 498541032 177 LQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILAVNLSFGIFTEPYMITGGGPM 238
Cdd:CHL00187 160 LQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPF 221
modB PRK09421
molybdate ABC transporter permease subunit;
126-226 6.28e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 40.29  E-value: 6.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 126 FSETGPINRFLYNAFGITIP--WFTdpqlAMLTIAIMVtwkfvgyYGLILYS---GLQAIPKSIFEAAELDGATSWVKFW 200
Cdd:PRK09421  70 MGRRGFIGQWLYEWFGISFAfsWRG----AALAAAVMA-------FPLMVRAirlSLEAVDRKLEQAARTLGASPWRVFF 138

                         90       100
                 ....*....|....*....|....*.
gi 498541032 201 KITLPLLNPAIVTVLILAVNLSFGIF 226
Cdd:PRK09421 139 TITLPLTLPGIIAGTVLAFARSLGEF 164
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 136-273 8.29e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 40.22  E-value: 8.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 136 LYNAFGITIPWFTDPqlAMLTIAIMVTWKFVGYYGLILYSGLQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVL 215
Cdd:PRK10592 124 LFVALAHAIGWPADR--GMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGW 201

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 498541032 216 ILAVNLSFGIFTEPYMITGGGpmnrTLTFMLYMYNTAFQRINP---SYATTIAIMTALINF 273
Cdd:PRK10592 202 LLAFTLSLDDLVIASFVSGPG----ATTLPMLVFSSVRMGVNPeinALATLILGVVGIVGF 258
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 4-225 1.38e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 39.60  E-value: 1.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032   4 KRREARLGWGLVSIYLLYTAIFWGYPFVWMLILAfsrwkfVGSPKFVGLQNFFRIFEDKIFWRVFLNTMNFLSY-----F 78
Cdd:PRK15050  17 RRRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQS------LTGEHGLGLATYRAVLGSPDFRGALLTTLQIAFAstagcL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032  79 IPMVFIASILFAI----------ALNRMKYFKTF-VTLSFLVAYVSSGVAySIMFQRIFS-ETGPINrFLYNAFGITI-- 144
Cdd:PRK15050  91 VLGVLLALVLAFVpfpgaslvgrFIDTFVAFPSFlITLAFTFLYGSAGSV-NIALQRLFGlEAPPLD-FLYSPGGVILae 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498541032 145 -----PWFTDPQLAMLTIaimvtwkfvgyyglilysglqaIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVT----VL 215
Cdd:PRK15050 169 itfytPFVVRPLLAAFAQ----------------------LDARQLEAAASLGASPWRVARRVILPEAWPALAAggslCL 226

                        250
                 ....*....|
gi 498541032 216 ILAVNlSFGI 225
Cdd:PRK15050 227 LLTLN-EFGI 235
malG PRK10998
maltose ABC transporter permease MalG;
157-218 2.05e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 38.92  E-value: 2.05e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 498541032 157 IAIMVtWKFVGYYglilysglQAIPKSIFEAAELDGATSWVKFWKITLPLLNPAIVTVLILA 218
Cdd:PRK10998 170 IALHV-WTIKGYF--------ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILS 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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