self-incompatibility ribonuclease S15, partial [Lycium andersonii]
Protein Classification
T2 family ribonuclease( domain architecture ID 649)
T2 family ribonuclease catalyzes a two-stage endonucleolytic cleavage of RNA to form 3'-nucleotides; similar to Aeromonas hydrophila ribonuclease, which is one of the few RNases that cleave the phosphodiester bond between any two nucleotide
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| RNase_T2 super family | cl00208 | Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism ... |
6-51 | 4.58e-04 | ||
Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. The actual alignment was detected with superfamily member cd01061: Pssm-ID: 469659 [Multi-domain] Cd Length: 195 Bit Score: 35.39 E-value: 4.58e-04
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| Name | Accession | Description | Interval | E-value | ||
| RNase_T2_euk | cd01061 | Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism ... |
6-51 | 4.58e-04 | ||
Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members. Pssm-ID: 238512 [Multi-domain] Cd Length: 195 Bit Score: 35.39 E-value: 4.58e-04
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| Name | Accession | Description | Interval | E-value | ||
| RNase_T2_euk | cd01061 | Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism ... |
6-51 | 4.58e-04 | ||
Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members. Pssm-ID: 238512 [Multi-domain] Cd Length: 195 Bit Score: 35.39 E-value: 4.58e-04
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| RNase_T2 | cd00374 | Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism ... |
5-51 | 8.39e-03 | ||
Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Pssm-ID: 238220 Cd Length: 195 Bit Score: 31.66 E-value: 8.39e-03
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| Blast search parameters | ||||
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