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Conserved domains on  [gi|238692991|sp|B2GDU6|]
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RecName: Full=Large ribosomal subunit protein bL36; AltName: Full=50S ribosomal protein L36

Protein Classification

ribosomal protein bL36( domain architecture ID 10011449)

ribosomal protein bL36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 2.67e-11

50S ribosomal protein L36; Reviewed


:

Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.72  E-value: 2.67e-11
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 238692991  1 MKVRPSVKRMCDSCKIVKRRGRVMVICINPKHKQRQG 37
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 2.67e-11

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.72  E-value: 2.67e-11
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 238692991  1 MKVRPSVKRMCDSCKIVKRRGRVMVICINPKHKQRQG 37
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 9.82e-10

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 46.66  E-value: 9.82e-10
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 238692991  1 MKVRPSVKRMCDSCKIVKRRGRVMVIC-INPKHKQRQG 37
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICkKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 1.47e-09

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 46.35  E-value: 1.47e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 238692991   1 MKVRPSVKRMCDSCKIVKRRGRVMVIC-INPKHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICkKNPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 1.12e-07

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 41.70  E-value: 1.12e-07
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 238692991   1 MKVRPSVKRMCDSCKIVKRRGRVMVICINPKHKQRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
MopB_Thiosulfate-R-like cd02755
The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and ...
 5-38 9.78e-03

The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.


Pssm-ID: 239156 [Multi-domain]  Cd Length: 454  Bit Score: 30.73  E-value: 9.78e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 238692991   5 PSVKRMCDS-CKIVKRR--GRVMVICINPKHKQRQGK 38
Cdd:cd02755    2 PSICEMCSSrCGILARVedGRVVKIDGNPLSPLSRGK 38
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 2.67e-11

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.72  E-value: 2.67e-11
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 238692991  1 MKVRPSVKRMCDSCKIVKRRGRVMVICINPKHKQRQG 37
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 9.82e-10

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 46.66  E-value: 9.82e-10
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 238692991  1 MKVRPSVKRMCDSCKIVKRRGRVMVIC-INPKHKQRQG 37
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICkKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 1.47e-09

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 46.35  E-value: 1.47e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 238692991   1 MKVRPSVKRMCDSCKIVKRRGRVMVIC-INPKHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICkKNPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 1.12e-07

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 41.70  E-value: 1.12e-07
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 238692991   1 MKVRPSVKRMCDSCKIVKRRGRVMVICINPKHKQRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-37 2.89e-03

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 30.73  E-value: 2.89e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 238692991  1 MKVRPSVKRMCD---SCKIVKRRGRVMVIC-INPKHKQRQG 37
Cdd:PRK00831  1 MKVRNSLKSLKNrhrDCQVVRRKGRVYVINkKNPRFKARQG 41
MopB_Thiosulfate-R-like cd02755
The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and ...
 5-38 9.78e-03

The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.


Pssm-ID: 239156 [Multi-domain]  Cd Length: 454  Bit Score: 30.73  E-value: 9.78e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 238692991   5 PSVKRMCDS-CKIVKRR--GRVMVICINPKHKQRQGK 38
Cdd:cd02755    2 PSICEMCSSrCGILARVedGRVVKIDGNPLSPLSRGK 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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