NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1119867376|ref|WP_072756407|]
View 

MULTISPECIES: 50S ribosomal protein L35 [Xanthomonadaceae]

Protein Classification

50S ribosomal protein L35( domain architecture ID 10000967)

50S ribosomal protein L35 is involved in signal peptide recognition

Gene Symbol:  rpmI
Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 7.23e-24

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440060  Cd Length: 64  Bit Score: 84.33  E-value: 7.23e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119867376  1 MPKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRMLPY 64
Cdd:COG0291    1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 7.23e-24

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 84.33  E-value: 7.23e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119867376  1 MPKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRMLPY 64
Cdd:COG0291    1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-62 2.70e-19

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 72.79  E-value: 2.70e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119867376  2 PKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRML 62
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-64 4.01e-17

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 67.30  E-value: 4.01e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119867376  2 PKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRMLPY 64
Cdd:TIGR00001  1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLLPY 63
rpl35 CHL00103
ribosomal protein L35
 1-65 5.95e-14

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 59.33  E-value: 5.95e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119867376  1 MPKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRMLPYL 65
Cdd:CHL00103   1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLMLPYL 65
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 7.23e-24

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 84.33  E-value: 7.23e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119867376  1 MPKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRMLPY 64
Cdd:COG0291    1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-62 2.70e-19

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 72.79  E-value: 2.70e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119867376  2 PKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRML 62
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-64 4.01e-17

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 67.30  E-value: 4.01e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119867376  2 PKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRMLPY 64
Cdd:TIGR00001  1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLLPY 63
rpl35 CHL00103
ribosomal protein L35
 1-65 5.95e-14

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 59.33  E-value: 5.95e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119867376  1 MPKIKTNRAAAKRFRKTASGKYKCGHANKSHILTKKATKRKRNLRQTNHVRPEDAGRLDRMLPYL 65
Cdd:CHL00103   1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLMLPYL 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH