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Conserved domains on  [gi|1078671409|gb|AOW18516|]
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hypothetical protein LPB03_14095 [Polaribacter vadi]

Protein Classification

glycoside hydrolase family 16 protein( domain architecture ID 10087149)

glycoside hydrolase family 16 protein is one of a widespread group of enzymes that hydrolyze the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_hydrolase_16 cd00413
glycosyl hydrolase family 16; The O-Glycosyl hydrolases are a widespread group of enzymes that ...
 40-248 5.78e-14

glycosyl hydrolase family 16; The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.


:

Pssm-ID: 185683 [Multi-domain]  Cd Length: 210  Bit Score: 68.62  E-value: 5.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409  40 DFSGYE-----WVVRTSdetkqGPGPNLFSDSEENVWVDDQGRLHLKV--VQDGGNWYCSGV-TLRKTFGYKKYVVYV-A 110
Cdd:cd00413     2 DFDGLAldtskWTIQDG-----PSWGGNMTNSPNNVYVENDGGLTLRTdrDQTDGPYSSAEIdSQKNNYTYGYYEARAkL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409 111 SDVealdENVVAGIFTYKNDEE-----EIDIEF-SKWSKSNNENS---QFAVQPSHLTGNKTRFDLNLNTDLSTHFFDWK 181
Cdd:cd00413    77 AGG----PGAVSAFWTYSDDDDppdggEIDIEFlGRDPTTVQTNVhwpGYGAGATTGEEKSVHLPFDPADDFHTYRVDWT 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409 182 ADKIEFgSYQGHTltpeskdvINTWTYTGSNIPpeneERFKINLWLFRGSA---PSDNKSAEMIIDRIEI 248
Cdd:cd00413   153 PGEITF-YVDGVL--------VATITNQVPDDP----MNIILNLWSDGGWWwggPPPGAPAYMEIDWVRV 209
 
Name Accession Description Interval E-value
Glyco_hydrolase_16 cd00413
glycosyl hydrolase family 16; The O-Glycosyl hydrolases are a widespread group of enzymes that ...
 40-248 5.78e-14

glycosyl hydrolase family 16; The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.


Pssm-ID: 185683 [Multi-domain]  Cd Length: 210  Bit Score: 68.62  E-value: 5.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409  40 DFSGYE-----WVVRTSdetkqGPGPNLFSDSEENVWVDDQGRLHLKV--VQDGGNWYCSGV-TLRKTFGYKKYVVYV-A 110
Cdd:cd00413     2 DFDGLAldtskWTIQDG-----PSWGGNMTNSPNNVYVENDGGLTLRTdrDQTDGPYSSAEIdSQKNNYTYGYYEARAkL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409 111 SDVealdENVVAGIFTYKNDEE-----EIDIEF-SKWSKSNNENS---QFAVQPSHLTGNKTRFDLNLNTDLSTHFFDWK 181
Cdd:cd00413    77 AGG----PGAVSAFWTYSDDDDppdggEIDIEFlGRDPTTVQTNVhwpGYGAGATTGEEKSVHLPFDPADDFHTYRVDWT 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409 182 ADKIEFgSYQGHTltpeskdvINTWTYTGSNIPpeneERFKINLWLFRGSA---PSDNKSAEMIIDRIEI 248
Cdd:cd00413   153 PGEITF-YVDGVL--------VATITNQVPDDP----MNIILNLWSDGGWWwggPPPGAPAYMEIDWVRV 209
 
Name Accession Description Interval E-value
Glyco_hydrolase_16 cd00413
glycosyl hydrolase family 16; The O-Glycosyl hydrolases are a widespread group of enzymes that ...
 40-248 5.78e-14

glycosyl hydrolase family 16; The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.


Pssm-ID: 185683 [Multi-domain]  Cd Length: 210  Bit Score: 68.62  E-value: 5.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409  40 DFSGYE-----WVVRTSdetkqGPGPNLFSDSEENVWVDDQGRLHLKV--VQDGGNWYCSGV-TLRKTFGYKKYVVYV-A 110
Cdd:cd00413     2 DFDGLAldtskWTIQDG-----PSWGGNMTNSPNNVYVENDGGLTLRTdrDQTDGPYSSAEIdSQKNNYTYGYYEARAkL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409 111 SDVealdENVVAGIFTYKNDEE-----EIDIEF-SKWSKSNNENS---QFAVQPSHLTGNKTRFDLNLNTDLSTHFFDWK 181
Cdd:cd00413    77 AGG----PGAVSAFWTYSDDDDppdggEIDIEFlGRDPTTVQTNVhwpGYGAGATTGEEKSVHLPFDPADDFHTYRVDWT 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078671409 182 ADKIEFgSYQGHTltpeskdvINTWTYTGSNIPpeneERFKINLWLFRGSA---PSDNKSAEMIIDRIEI 248
Cdd:cd00413   153 PGEITF-YVDGVL--------VATITNQVPDDP----MNIILNLWSDGGWWwggPPPGAPAYMEIDWVRV 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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