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Conserved domains on  [gi|1036466891|ref|WP_064702791|]
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MULTISPECIES: phage minor head protein [Pasteurella]

Protein Classification

structural protein( domain architecture ID 4421)

phage structural protein may be a minor head or minor capsid protein and may be involved in phage head morphogenesis

Gene Ontology:  GO:0044423|GO:0005198
PubMed:  8497043

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_Mu_F super family cl10072
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 191-295 3.19e-11

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


The actual alignment was detected with superfamily member pfam04233:

Pssm-ID: 447890  Cd Length: 110  Bit Score: 59.32  E-value: 3.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 191 ISEAVVRGINVKKTAELISKRLDISMSRAKKMAQTEQLSVY---RRAEWEEAKAARDELgldagiLHISALKSTTRITHA 267
Cdd:pfam04233   7 LTQAIMRGEGYEELAKRLKDRMQTSRSRLRTIARTEALRAYnaaRYASQAAQKGVGKYK------RYSAIKDSRTRPIHR 80

                          90       100
                  ....*....|....*....|....*...
gi 1036466891 268 KRHGKVFTPEEQEAWYQKDGNRFNCYCK 295
Cdd:pfam04233  81 ALDGKIFKVDDPFWGTGAPPEDPNCRCV 108
 
Name Accession Description Interval E-value
Phage_Mu_F pfam04233
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 191-295 3.19e-11

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


Pssm-ID: 309383  Cd Length: 110  Bit Score: 59.32  E-value: 3.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 191 ISEAVVRGINVKKTAELISKRLDISMSRAKKMAQTEQLSVY---RRAEWEEAKAARDELgldagiLHISALKSTTRITHA 267
Cdd:pfam04233   7 LTQAIMRGEGYEELAKRLKDRMQTSRSRLRTIARTEALRAYnaaRYASQAAQKGVGKYK------RYSAIKDSRTRPIHR 80

                          90       100
                  ....*....|....*....|....*...
gi 1036466891 268 KRHGKVFTPEEQEAWYQKDGNRFNCYCK 295
Cdd:pfam04233  81 ALDGKIFKVDDPFWGTGAPPEDPNCRCV 108
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
 190-294 1.12e-09

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 55.08  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 190 IISEAVVRGINVKKTAELISKRLDISMSRAKKMAQTEQLSVYRRAEWEEAKAARDELGLdagilhISALKSTTRITHAKR 269
Cdd:TIGR01641   4 ILADGVQRGLGPNELAKRLRKELGVQKHYAQRLARTETARIYNQTKLERYKKAGPIYEY------IAIIDSRTRPICRAL 77

                          90       100
                  ....*....|....*....|....*
gi 1036466891 270 HGKVFTPEEQEAWYQKDGNRFNCYC 294
Cdd:TIGR01641  78 NGKIFKVDDAVPGVNAPPLHPNCRC 102
COG2369 COG2369
Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: ...
 183-303 2.68e-05

Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons];


Pssm-ID: 441936 [Multi-domain]  Cd Length: 201  Bit Score: 44.25  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 183 TKSDLIYIISEAVVRGINVKKTAELISKRLD----------ISMSRAKKMAQTEQLSVYRRAEWEEAKAARDELGLDAGI 252
Cdd:COG2369    47 IRLDLLNDIRAALTQALEEGTTLEEFRKDLEpilakkgwggGSKRRARTIYRTNLRTAYAAGRWARMQELGVKEARPYWR 126

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1036466891 253 lHISALKSTTRITHAKRHGKVFTPEeqEAWYQKD--GNRFNCYCKSQVIIKED 303
Cdd:COG2369   127 -YRAVGDERTRPSHRALDGKVLPLD--DPFWGTHypPNGWNCRCTVRALSEDD 176
 
Name Accession Description Interval E-value
Phage_Mu_F pfam04233
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 191-295 3.19e-11

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


Pssm-ID: 309383  Cd Length: 110  Bit Score: 59.32  E-value: 3.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 191 ISEAVVRGINVKKTAELISKRLDISMSRAKKMAQTEQLSVY---RRAEWEEAKAARDELgldagiLHISALKSTTRITHA 267
Cdd:pfam04233   7 LTQAIMRGEGYEELAKRLKDRMQTSRSRLRTIARTEALRAYnaaRYASQAAQKGVGKYK------RYSAIKDSRTRPIHR 80

                          90       100
                  ....*....|....*....|....*...
gi 1036466891 268 KRHGKVFTPEEQEAWYQKDGNRFNCYCK 295
Cdd:pfam04233  81 ALDGKIFKVDDPFWGTGAPPEDPNCRCV 108
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
 190-294 1.12e-09

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 55.08  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 190 IISEAVVRGINVKKTAELISKRLDISMSRAKKMAQTEQLSVYRRAEWEEAKAARDELGLdagilhISALKSTTRITHAKR 269
Cdd:TIGR01641   4 ILADGVQRGLGPNELAKRLRKELGVQKHYAQRLARTETARIYNQTKLERYKKAGPIYEY------IAIIDSRTRPICRAL 77

                          90       100
                  ....*....|....*....|....*
gi 1036466891 270 HGKVFTPEEQEAWYQKDGNRFNCYC 294
Cdd:TIGR01641  78 NGKIFKVDDAVPGVNAPPLHPNCRC 102
COG2369 COG2369
Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: ...
 183-303 2.68e-05

Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons];


Pssm-ID: 441936 [Multi-domain]  Cd Length: 201  Bit Score: 44.25  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 183 TKSDLIYIISEAVVRGINVKKTAELISKRLD----------ISMSRAKKMAQTEQLSVYRRAEWEEAKAARDELGLDAGI 252
Cdd:COG2369    47 IRLDLLNDIRAALTQALEEGTTLEEFRKDLEpilakkgwggGSKRRARTIYRTNLRTAYAAGRWARMQELGVKEARPYWR 126

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1036466891 253 lHISALKSTTRITHAKRHGKVFTPEeqEAWYQKD--GNRFNCYCKSQVIIKED 303
Cdd:COG2369   127 -YRAVGDERTRPSHRALDGKVLPLD--DPFWGTHypPNGWNCRCTVRALSEDD 176
COG5585 COG5585
Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, ...
 118-281 5.40e-03

Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, transposons];


Pssm-ID: 444324  Cd Length: 223  Bit Score: 37.47  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 118 LWFELYLEESQKAATLSTHSSLsqqsDLYLTQRPLYQILFSEPYL----ERLAIAQQL----FYEQWRGLTY-----QTK 184
Cdd:COG5585    18 LLLGAELDLELKALANGEQDAI----EAFLSEAYLREVLRAPGDLglaaEFAAKAESLldkvINVSWNGKNWsdriwRNK 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1036466891 185 SDLIYI----ISEAVVRGINVKKTAELISKRLDISMSRAKKMAQTEQLSVYRRAeweeAKAARDELGLDAGILHISALKS 260
Cdd:COG5585    94 DNLGSKladdLTTSLLRGKNPKTIIKELRREFDVSKYAAARLVITESARVQSEV----QLLSYKDLGVKKYKILATLDKK 169

                         170       180
                  ....*....|....*....|.
gi 1036466891 261 TTRITHaKRHGKVFTPEEQEA 281
Cdd:COG5585   170 TSDICR-SLDGKIFDVKEAKI 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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