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Conserved domains on  [gi|736897190|ref|WP_034896158|]
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5-oxoprolinase subunit PxpB [Erwinia typographi]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-212 1.06e-102

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 296.28  E-value: 1.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190   1 MQRARCYLLGERAVVLELEPPITLAAQQRIWGLSARLMTR--PEVIEVVPGMNNITVLLsDPQQTALDA-IEWLQSWWEE 77
Cdd:COG2049    2 RMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAplPGVVEVVPAYRSLLVHF-DPLVIDPAAlAARLRALLAE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190  78 -SESLEVVSREVAIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRV 156
Cdd:COG2049   81 lDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRT 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 736897190 157 AVPAGSVGIGGSQTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPTFLRPGDSVRFVP 212
Cdd:COG2049  161 RVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-212 1.06e-102

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 296.28  E-value: 1.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190   1 MQRARCYLLGERAVVLELEPPITLAAQQRIWGLSARLMTR--PEVIEVVPGMNNITVLLsDPQQTALDA-IEWLQSWWEE 77
Cdd:COG2049    2 RMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAplPGVVEVVPAYRSLLVHF-DPLVIDPAAlAARLRALLAE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190  78 -SESLEVVSREVAIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRV 156
Cdd:COG2049   81 lDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRT 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 736897190 157 AVPAGSVGIGGSQTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPTFLRPGDSVRFVP 212
Cdd:COG2049  161 RVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
9-211 2.97e-94

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 274.04  E-value: 2.97e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190    9 LGERAVVLELEPPITLAAQQRIWGLSARLMTRPEVIEVVPGMNNITVLLsDPQQTALDAIEWLQSWWEESESLEVVSREV 88
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFY-DMYEVYKHLPQRLSSPWEEVKDYEVNRRII 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190   89 AIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRVAVPAGSVGIGGS 168
Cdd:TIGR00370  80 EIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGGL 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 736897190  169 QTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPTFLRPGDSVRFV 211
Cdd:TIGR00370 160 QTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
5-202 8.82e-89

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 259.80  E-value: 8.82e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190    5 RCYLLGERAVVLELEPPITLAAQQRIWGLSARLMTR--PEVIEVVPGMNNITVLLsDPQQTALDA-IEWLQSWWEESESL 81
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAplPGVVEVVPGYRSLLVHY-DPLVTDLAAlEARLRALLAALEAA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190   82 EVV-SREVAIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRVAVPA 160
Cdd:pfam02682  80 AAPgGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPA 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 736897190  161 GSVGIGGSQTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPTFL 202
Cdd:pfam02682 160 GSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
5-200 1.64e-87

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 256.68  E-value: 1.64e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190     5 RCYLLGERAVVLELEPPITLAAQQRIWGLSARLMTR--PEVIEVVPGMNNITVLLsDPQQTALDAI-EWLQSWWEE--SE 79
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAplPGVVELVPGYRSLLVHF-DPLVIDPAALlARLRALEALplAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190    80 SLEVVSREVAIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRVAVP 159
Cdd:smart00796  81 ALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 736897190   160 AGSVGIGGSQTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPT 200
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-212 1.06e-102

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 296.28  E-value: 1.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190   1 MQRARCYLLGERAVVLELEPPITLAAQQRIWGLSARLMTR--PEVIEVVPGMNNITVLLsDPQQTALDA-IEWLQSWWEE 77
Cdd:COG2049    2 RMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAplPGVVEVVPAYRSLLVHF-DPLVIDPAAlAARLRALLAE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190  78 -SESLEVVSREVAIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRV 156
Cdd:COG2049   81 lDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRT 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 736897190 157 AVPAGSVGIGGSQTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPTFLRPGDSVRFVP 212
Cdd:COG2049  161 RVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
9-211 2.97e-94

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 274.04  E-value: 2.97e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190    9 LGERAVVLELEPPITLAAQQRIWGLSARLMTRPEVIEVVPGMNNITVLLsDPQQTALDAIEWLQSWWEESESLEVVSREV 88
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFY-DMYEVYKHLPQRLSSPWEEVKDYEVNRRII 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190   89 AIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRVAVPAGSVGIGGS 168
Cdd:TIGR00370  80 EIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGGL 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 736897190  169 QTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPTFLRPGDSVRFV 211
Cdd:TIGR00370 160 QTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
5-202 8.82e-89

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 259.80  E-value: 8.82e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190    5 RCYLLGERAVVLELEPPITLAAQQRIWGLSARLMTR--PEVIEVVPGMNNITVLLsDPQQTALDA-IEWLQSWWEESESL 81
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAplPGVVEVVPGYRSLLVHY-DPLVTDLAAlEARLRALLAALEAA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190   82 EVV-SREVAIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRVAVPA 160
Cdd:pfam02682  80 AAPgGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPA 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 736897190  161 GSVGIGGSQTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPTFL 202
Cdd:pfam02682 160 GSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
5-200 1.64e-87

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 256.68  E-value: 1.64e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190     5 RCYLLGERAVVLELEPPITLAAQQRIWGLSARLMTR--PEVIEVVPGMNNITVLLsDPQQTALDAI-EWLQSWWEE--SE 79
Cdd:smart00796   2 RIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAplPGVVELVPGYRSLLVHF-DPLVIDPAALlARLRALEALplAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736897190    80 SLEVVSREVAIPVVYGGSAGPDLAVVASQSGLTQQQVVEAHASAQYVVYFIGFQPGFPYMAGLDERLYTPRRAEPRVAVP 159
Cdd:smart00796  81 ALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 736897190   160 AGSVGIGGSQTGVYPFTSPGGWQLIGQTDLTLFNPQDQPPT 200
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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