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Conserved domains on  [gi|499221139|ref|WP_010918679|]
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flagellin [Caulobacter vibrioides]

Protein Classification

flagellin( domain architecture ID 11442539)

flagellin polymerizes to form the filaments of bacterial flagella; includes flagellins and hook associated protein 3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-258 4.74e-40

Flagellin and related hook-associated protein FlgL [Cell motility];


:

Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 139.23  E-value: 4.74e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   5 SINTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGD 84
Cdd:COG1344    2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  85 TITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTttklsflaNSDGSAFTVTaktl 164
Cdd:COG1344   82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGT--------ATDTPPFQVD---- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 165 tlgglgltttsSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARL 244
Cdd:COG1344  150 -----------YQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRL 218

                        250
                 ....*....|....
gi 499221139 245 QSLQTKQQLGVQAL 258
Cdd:COG1344  219 TKLQTLLQAALAAL 232
 
Name Accession Description Interval E-value
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-258 4.74e-40

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 139.23  E-value: 4.74e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   5 SINTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGD 84
Cdd:COG1344    2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  85 TITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTttklsflaNSDGSAFTVTaktl 164
Cdd:COG1344   82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGT--------ATDTPPFQVD---- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 165 tlgglgltttsSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARL 244
Cdd:COG1344  150 -----------YQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRL 218

                        250
                 ....*....|....
gi 499221139 245 QSLQTKQQLGVQAL 258
Cdd:COG1344  219 TKLQTLLQAALAAL 232
PRK12687 PRK12687
flagellin; Reviewed
 3-273 6.04e-26

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 103.59  E-value: 6.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   3 LNSINTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAA 82
Cdd:PRK12687   1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  83 GDTIT----DLLGKMKEKALAASDTSLSTASfnaLKADFDSLRDQVTKAATNAKFNG----------------------- 135
Cdd:PRK12687  81 LTSVVgdskSGLTALKAKLVAAREPGIDRTK---IQSEITAIQNDLKNTAGLAVFNGenwlsvdsspssynatksvvssf 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 136 --------VSIADGTTTKLSFLANSDGSAFTV--------TAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTALQTATN 199
Cdd:PRK12687 158 trvggtvaIKTIDVNIAKLALYDTNGSSTTGIldktvtvgTATASVSSIDIHLLTDSATDLTKLDGYIGIVDQALGSVTQ 237

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499221139 200 KLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARLQSLQTKQQLGVQALSIANSSSSAILSLFR 273
Cdd:PRK12687 238 ASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 6-144 4.18e-17

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 75.84  E-value: 4.18e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139    6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 499221139   86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTT 144
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 16-257 5.08e-09

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 55.82  E-value: 5.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   16 LQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDTITDLLGKMKE 95
Cdd:TIGR02550  12 LNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVGDVLQRARE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   96 KALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTK------------------------------ 145
Cdd:TIGR02550  92 LAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDtppfsedeggevtyngdggqrkvqvasnrs 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  146 ----------LSFLANSDGSAFTVTAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTHL 215
Cdd:TIGR02550 172 mpighpgdkvFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLNDLDKALDNVLSARAEVGARLNRLENLN 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 499221139  216 TFVGKLQDSLDAGVGNLMDADLAKESARLqslqTKQQLGVQA 257
Cdd:TIGR02550 252 SRLSEQKLQLTEQLSDLEDVDLAEAISDL----NMQQAALQA 289
 
Name Accession Description Interval E-value
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-258 4.74e-40

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 139.23  E-value: 4.74e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   5 SINTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGD 84
Cdd:COG1344    2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  85 TITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTttklsflaNSDGSAFTVTaktl 164
Cdd:COG1344   82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGT--------ATDTPPFQVD---- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 165 tlgglgltttsSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARL 244
Cdd:COG1344  150 -----------YQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRL 218

                        250
                 ....*....|....
gi 499221139 245 QSLQTKQQLGVQAL 258
Cdd:COG1344  219 TKLQTLLQAALAAL 232
PRK12687 PRK12687
flagellin; Reviewed
 3-273 6.04e-26

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 103.59  E-value: 6.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   3 LNSINTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAA 82
Cdd:PRK12687   1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  83 GDTIT----DLLGKMKEKALAASDTSLSTASfnaLKADFDSLRDQVTKAATNAKFNG----------------------- 135
Cdd:PRK12687  81 LTSVVgdskSGLTALKAKLVAAREPGIDRTK---IQSEITAIQNDLKNTAGLAVFNGenwlsvdsspssynatksvvssf 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 136 --------VSIADGTTTKLSFLANSDGSAFTV--------TAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTALQTATN 199
Cdd:PRK12687 158 trvggtvaIKTIDVNIAKLALYDTNGSSTTGIldktvtvgTATASVSSIDIHLLTDSATDLTKLDGYIGIVDQALGSVTQ 237

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499221139 200 KLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARLQSLQTKQQLGVQALSIANSSSSAILSLFR 273
Cdd:PRK12687 238 ASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
PRK12802 PRK12802
flagellin; Provisional
 1-258 1.36e-18

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 83.00  E-value: 1.36e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   1 MALNsINTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVAL 80
Cdd:PRK12802   1 MALT-VNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  81 AAGDTITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSF-LANSDGSAFTV 159
Cdd:PRK12802  80 GALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFqVGANTGQSNQI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 160 T---------AKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAGVG 230
Cdd:PRK12802 160 TfglsasfdaTGLGVGSGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARG 239

                        250       260
                 ....*....|....*....|....*...
gi 499221139 231 NLMDADLAKESARLQSLQTKQQLGVQAL 258
Cdd:PRK12802 240 RVQDTDFAAETAQLTKQQTLQQASTSVL 267
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 6-144 4.18e-17

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 75.84  E-value: 4.18e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139    6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 499221139   86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTT 144
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
PRK12807 PRK12807
flagellin; Provisional
 6-258 6.47e-15

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 72.93  E-value: 6.47e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK12807   3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSFLANSDGSAFTV------ 159
Cdd:PRK12807  83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIetldss 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 160 -----------TAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAG 228
Cdd:PRK12807 163 atnqqitiklaNTTAEKLGIDATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASA 242

                        250       260       270
                 ....*....|....*....|....*....|
gi 499221139 229 VGNLMDADLAKESARLQSLQTKQQLGVQAL 258
Cdd:PRK12807 243 ASQIEDADMAKEMSEMTKFKILNEAGISML 272
PRK08869 PRK08869
polar flagellin E;
5-148 1.55e-11

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 63.80  E-value: 1.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   5 SINTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGD 84
Cdd:PRK08869   3 NVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMN 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499221139  85 TITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSF 148
Cdd:PRK08869  83 ETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSF 146
PRK12806 PRK12806
flagellin; Provisional
 6-148 4.12e-09

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 56.62  E-value: 4.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK12806   5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSF 148
Cdd:PRK12806  85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASF 147
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 16-257 5.08e-09

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 55.82  E-value: 5.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   16 LQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDTITDLLGKMKE 95
Cdd:TIGR02550  12 LNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVGDVLQRARE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   96 KALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTK------------------------------ 145
Cdd:TIGR02550  92 LAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDtppfsedeggevtyngdggqrkvqvasnrs 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  146 ----------LSFLANSDGSAFTVTAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTHL 215
Cdd:TIGR02550 172 mpighpgdkvFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLNDLDKALDNVLSARAEVGARLNRLENLN 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 499221139  216 TFVGKLQDSLDAGVGNLMDADLAKESARLqslqTKQQLGVQA 257
Cdd:TIGR02550 252 SRLSEQKLQLTEQLSDLEDVDLAEAISDL----NMQQAALQA 289
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 4-144 9.10e-09

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 55.00  E-value: 9.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   4 NSINTNSgaliaLQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAG 83
Cdd:PRK07701   6 NMLANNF-----LRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499221139  84 DTITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAAtNAKFNGVSIADGTTT 144
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIA-NTQYNGRYIFNGTKT 140
PRK13589 PRK13589
flagellin A;
6-148 5.56e-07

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 50.41  E-value: 5.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK13589   5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSF 148
Cdd:PRK13589  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEF 147
PRK08411 PRK08411
flagellin; Reviewed
 6-148 1.23e-06

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 49.22  E-value: 1.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK08411   5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSF 148
Cdd:PRK08411  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEF 147
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 187-272 1.31e-06

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 45.40  E-value: 1.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  187 IGTIDTALQTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARLQSLQTKQQLGVQALSIANSSSS 266
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 499221139  267 AILSLF 272
Cdd:pfam00700  81 SLLNLL 86
PRK12805 PRK12805
FliC/FljB family flagellin;
6-258 1.16e-05

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 45.63  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK12805   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIAD----GTTTKLSFLANSDG------- 154
Cdd:PRK12805  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqtatGAATQVSIQASDKAndlinid 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 155 -------SAFTVTAKTLTLGGLGLTTTSSFTTAAAAKTMigTIDTALQTATNKLASLGTSSTGLDTHLTFVGKLQDSLDA 227
Cdd:PRK12805 163 lfnakglSAGTITLGSGSTVAGYSALSVADADSSQEATE--AIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 499221139 228 GVGNLMDADLAKESARLQSLQTKQQLGVQAL 258
Cdd:PRK12805 241 SASSIEDADMAAEMSEMTKYKILTQTSISML 271
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 16-123 1.20e-05

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 46.06  E-value: 1.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  16 LQNLNTTSSELNNVQQRISTGKKIGSAKDN--GAIWATAKNQSATANS-----INAVKDSLQRGQSTIdvalaagDTITD 88
Cdd:PRK08870  13 VNSMLDQQSQLSQLQQQLSSGKKLLTPSDDpvAAAQAVNLSQQSALLDqytknINLARNRLQQEESTL-------GSVED 85

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 499221139  89 LLGKMKEKALAASDTSLSTASFNALKADFDSLRDQ 123
Cdd:PRK08870  86 LLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQ 120
PRK12808 PRK12808
flagellin; Provisional
 6-155 1.46e-05

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 45.71  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK12808   3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTT-KLSFLANSDGS 155
Cdd:PRK12808  83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSiNIQTLDSSDGD 153
PRK06819 PRK06819
FliC/FljB family flagellin;
6-144 1.81e-05

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 45.54  E-value: 1.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK06819   5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTT 144
Cdd:PRK06819  85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAEDTT 143
PRK12584 PRK12584
flagellin A; Reviewed
 6-148 2.69e-05

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 45.28  E-value: 2.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK12584   5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSF 148
Cdd:PRK12584  85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEF 147
PRK12804 PRK12804
flagellin; Provisional
 6-240 7.02e-05

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 43.45  E-value: 7.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDNGAIWATAKNQSATANSINAVKDSLQRGQSTIDVALAAGDT 85
Cdd:PRK12804   3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  86 ITDLLGKMKEKALAASDTSLSTAS-FNALKADFDSLRDQVTKAATNAKFNGVSIADGTTTKLSFLANSDGSAF------- 157
Cdd:PRK12804  83 THSILQRVRELVVQAGNTGTQDGTdLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGTKSLTFqiganaa 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 158 -----------------------TVTAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTALQTATNKLASLGTSSTGLDTH 214
Cdd:PRK12804 163 qqlsvnieamsadalgvkdtdgtLVTGKSVSDIDVTKFANAAAAADGGFDDQLKIVDGAIKQVSDQRSKLGAVQNRLEHT 242

                        250       260
                 ....*....|....*....|....*.
gi 499221139 215 LTFVGKLQDSLDAGVGNLMDADLAKE 240
Cdd:PRK12804 243 INNLGASGENLTAAESRIRDVDMAKE 268
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 6-160 7.35e-05

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 43.47  E-value: 7.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139   6 INTNSGALIALQNLNTTSSELNNVQQRISTGKKIGSAKDN--GAIWATAKNQSATANS-----INAVKDSLQRGQSTIdv 78
Cdd:PRK07192   3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDpiASARLLELSREQSNNSqyadnIANLSNSLNNQEGHL-- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139  79 alaagDTITDLLGKMKEKALAASDTSLSTASFNALKADFDSLRDQVTKAATNAKFNGVSIADGT-TTKLSFLANSDGSAF 157
Cdd:PRK07192  81 -----SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTaSNTQPITFDAAGGTY 155


                 ...
gi 499221139 158 TVT 160
Cdd:PRK07192 156 TYN 158
PRK12688 PRK12688
flagellin; Reviewed
 117-273 1.73e-03

flagellin; Reviewed


Pssm-ID: 171664 [Multi-domain]  Cd Length: 751  Bit Score: 39.48  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 117 FDSLRDQVTKAATNAKFNGVSIADGTTTKLSF--LANSDGSAFTVTAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTAL 194
Cdd:PRK12688 593 YNNILNQIDTTSQDASFNGVNLLNGDTLKLVFneTGKSTLSIQGVTFNPAGLGLSALTSGTDFIDNAATNKVLANLNTAS 672

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499221139 195 QTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARLQSLQTKQQLGVQALSIANSSSSAILSLFR 273
Cdd:PRK12688 673 STLRSQASALGSNLSIVQVRQDFSKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSLANQSQQSVLQLLR 751
PRK14708 PRK14708
flagellin; Provisional
 117-273 1.89e-03

flagellin; Provisional


Pssm-ID: 173171 [Multi-domain]  Cd Length: 888  Bit Score: 39.51  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499221139 117 FDSLRDQVTKAATNAKFNGVSIADGTTTKLSF--LANSDGSAFTVTAKTLTLGGLGLTTTSSFTTAAAAKTMIGTIDTAL 194
Cdd:PRK14708 730 FNDVLDQIKTTAQDASFNGVNLLNGDTLKLVFneTGKSTISIQGVTFNPTGLGLSTLVSGVDFIDNNATNAVLAKLSTAS 809

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499221139 195 QTATNKLASLGTSSTGLDTHLTFVGKLQDSLDAGVGNLMDADLAKESARLQSLQTKQQLGVQALSIANSSSSAILSLFR 273
Cdd:PRK14708 810 TTLRSQASAFGSNLSIVQARQDFSKSLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSLANQSQQGVLQLLR 888
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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