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Conserved domains on  [gi|1821199484|gb|QIL41686|]
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DUF4397 domain-containing protein [Pedobacter sp. HDW13]

Protein Classification

DUF4397 domain-containing protein( domain architecture ID 10627008)

DUF4397 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4397 pfam14344
Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. ...
 38-150 4.11e-19

Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.


:

Pssm-ID: 464143  Cd Length: 115  Bit Score: 79.58  E-value: 4.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821199484  38 ATLSFNNGLDLTGKFDFYVNG---IKKASLDALlhSDYSEVPEGKLTVKVSNTVSSATLASADFTLTAGRNYSVFICGTA 114
Cdd:pfam14344   1 AYVRVVHASPDAPAVDVYVNGqkvLENVAYGDV--TGYLPLPAGTYTVKVTPTGTPVVLLSTTVTVEAGKAYTVAAVGSA 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1821199484 115 SA-PTLVLTEDNLNVPIKDSGKIRFVNLSQGAKGLDL 150
Cdd:pfam14344  79 DGsLELLVIEDDLSAPPAGKARVRFVHLSPDAPAVDV 115
DUF4397 super family cl21684
Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. ...
 134-228 3.53e-08

Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.


The actual alignment was detected with superfamily member pfam14344:

Pssm-ID: 473931  Cd Length: 115  Bit Score: 50.30  E-value: 3.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821199484 134 GKIRFVNLSQGAKGLDLNVRGkQPVFSNLAYKSATNFenMAVAA-EVDFDLRETGNNQVINSlEKVKIENGKIYTIIATG 212
Cdd:pfam14344   1 AYVRVVHASPDAPAVDVYVNG-QKVLENVAYGDVTGY--LPLPAgTYTVKVTPTGTPVVLLS-TTVTVEAGKAYTVAAVG 76

                          90
                  ....*....|....*.
gi 1821199484 213 drsENSANVKMTVITN 228
Cdd:pfam14344  77 ---SADGSLELLVIED 89
 
Name Accession Description Interval E-value
DUF4397 pfam14344
Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. ...
 38-150 4.11e-19

Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.


Pssm-ID: 464143  Cd Length: 115  Bit Score: 79.58  E-value: 4.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821199484  38 ATLSFNNGLDLTGKFDFYVNG---IKKASLDALlhSDYSEVPEGKLTVKVSNTVSSATLASADFTLTAGRNYSVFICGTA 114
Cdd:pfam14344   1 AYVRVVHASPDAPAVDVYVNGqkvLENVAYGDV--TGYLPLPAGTYTVKVTPTGTPVVLLSTTVTVEAGKAYTVAAVGSA 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1821199484 115 SA-PTLVLTEDNLNVPIKDSGKIRFVNLSQGAKGLDL 150
Cdd:pfam14344  79 DGsLELLVIEDDLSAPPAGKARVRFVHLSPDAPAVDV 115
DUF4397 pfam14344
Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. ...
 134-228 3.53e-08

Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.


Pssm-ID: 464143  Cd Length: 115  Bit Score: 50.30  E-value: 3.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821199484 134 GKIRFVNLSQGAKGLDLNVRGkQPVFSNLAYKSATNFenMAVAA-EVDFDLRETGNNQVINSlEKVKIENGKIYTIIATG 212
Cdd:pfam14344   1 AYVRVVHASPDAPAVDVYVNG-QKVLENVAYGDVTGY--LPLPAgTYTVKVTPTGTPVVLLS-TTVTVEAGKAYTVAAVG 76

                          90
                  ....*....|....*.
gi 1821199484 213 drsENSANVKMTVITN 228
Cdd:pfam14344  77 ---SADGSLELLVIED 89
 
Name Accession Description Interval E-value
DUF4397 pfam14344
Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. ...
 38-150 4.11e-19

Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.


Pssm-ID: 464143  Cd Length: 115  Bit Score: 79.58  E-value: 4.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821199484  38 ATLSFNNGLDLTGKFDFYVNG---IKKASLDALlhSDYSEVPEGKLTVKVSNTVSSATLASADFTLTAGRNYSVFICGTA 114
Cdd:pfam14344   1 AYVRVVHASPDAPAVDVYVNGqkvLENVAYGDV--TGYLPLPAGTYTVKVTPTGTPVVLLSTTVTVEAGKAYTVAAVGSA 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1821199484 115 SA-PTLVLTEDNLNVPIKDSGKIRFVNLSQGAKGLDL 150
Cdd:pfam14344  79 DGsLELLVIEDDLSAPPAGKARVRFVHLSPDAPAVDV 115
DUF4397 pfam14344
Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. ...
 134-228 3.53e-08

Domain of unknown function (DUF4397); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.


Pssm-ID: 464143  Cd Length: 115  Bit Score: 50.30  E-value: 3.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821199484 134 GKIRFVNLSQGAKGLDLNVRGkQPVFSNLAYKSATNFenMAVAA-EVDFDLRETGNNQVINSlEKVKIENGKIYTIIATG 212
Cdd:pfam14344   1 AYVRVVHASPDAPAVDVYVNG-QKVLENVAYGDVTGY--LPLPAgTYTVKVTPTGTPVVLLS-TTVTVEAGKAYTVAAVG 76

                          90
                  ....*....|....*.
gi 1821199484 213 drsENSANVKMTVITN 228
Cdd:pfam14344  77 ---SADGSLELLVIED 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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