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Conserved domains on  [gi|127138620|ref|NP_079703|]
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regulator of cell cycle RGCC [Mus musculus]

Protein Classification

RGCC domain-containing protein( domain architecture ID 10633503)

RGCC domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RGCC pfam15151
Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. ...
 27-137 8.67e-55

Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 130 amino acids in length. There is a conserved KLGDT sequence motif.


:

Pssm-ID: 464535  Cd Length: 128  Bit Score: 167.78  E-value: 8.67e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 127138620   27 DLTDVLCEFDAVLADFASPFHERHFHYEEHLERMKRRSSASVSDSsGFSDSESADSVYRDSFTFSDEKLNSPTNSSPALL 106
Cdd:pfam15151  19 DLSDVLCEFDAVIEDFTSPAEKRHFRYDEHLKTMKRRSSASVSDS-GISDSESADSLYRNSFSFSDEKLNSPTVSSPSLS 97

                          90       100       110
                  ....*....|....*....|....*....|.
gi 127138620  107 PSAVTPRKAKLGDTKELEDFIADLDRTLASM 137
Cdd:pfam15151  98 SPLVTPPKAKLGDTKELEDFIADLDRTLESM 128
 
Name Accession Description Interval E-value
RGCC pfam15151
Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. ...
 27-137 8.67e-55

Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 130 amino acids in length. There is a conserved KLGDT sequence motif.


Pssm-ID: 464535  Cd Length: 128  Bit Score: 167.78  E-value: 8.67e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 127138620   27 DLTDVLCEFDAVLADFASPFHERHFHYEEHLERMKRRSSASVSDSsGFSDSESADSVYRDSFTFSDEKLNSPTNSSPALL 106
Cdd:pfam15151  19 DLSDVLCEFDAVIEDFTSPAEKRHFRYDEHLKTMKRRSSASVSDS-GISDSESADSLYRNSFSFSDEKLNSPTVSSPSLS 97

                          90       100       110
                  ....*....|....*....|....*....|.
gi 127138620  107 PSAVTPRKAKLGDTKELEDFIADLDRTLASM 137
Cdd:pfam15151  98 SPLVTPPKAKLGDTKELEDFIADLDRTLESM 128
 
Name Accession Description Interval E-value
RGCC pfam15151
Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. ...
 27-137 8.67e-55

Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 130 amino acids in length. There is a conserved KLGDT sequence motif.


Pssm-ID: 464535  Cd Length: 128  Bit Score: 167.78  E-value: 8.67e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 127138620   27 DLTDVLCEFDAVLADFASPFHERHFHYEEHLERMKRRSSASVSDSsGFSDSESADSVYRDSFTFSDEKLNSPTNSSPALL 106
Cdd:pfam15151  19 DLSDVLCEFDAVIEDFTSPAEKRHFRYDEHLKTMKRRSSASVSDS-GISDSESADSLYRNSFSFSDEKLNSPTVSSPSLS 97

                          90       100       110
                  ....*....|....*....|....*....|.
gi 127138620  107 PSAVTPRKAKLGDTKELEDFIADLDRTLASM 137
Cdd:pfam15151  98 SPLVTPPKAKLGDTKELEDFIADLDRTLESM 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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