NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|194382208|dbj|BAG58859|]
View 

unnamed protein product [Homo sapiens]

Protein Classification

tautomerase family protein( domain architecture ID 1755)

tautomerase family protein similar to Homo sapiens macrophage migration inhibitory factor and D-dopachrome decarboxylase-like protein

CATH:  3.30.429.10
Gene Ontology:  GO:0006725|GO:0016853
PubMed:  29184004|12051677|18695941

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
4Oxalocrotonate_Tautomerase super family cl00235
4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The ...
 2-95 1.93e-50

4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.


The actual alignment was detected with superfamily member pfam01187:

Pssm-ID: 444774  Cd Length: 114  Bit Score: 156.06  E-value: 1.93e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194382208    2 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGtAEDNRSHSAHF 81
Cdd:pfam01187   1 PMFTIDTNLPANSVPAGLEKRLTAALAKALGKPADRIAVHIRPGQAMVFGGSTDPCAVCSIKSIGVVG-AEQNRSHSALL 79

                          90
                  ....*....|....
gi 194382208   82 FEFLTKELALGQDR 95
Cdd:pfam01187  80 FKFLTKELGLPKDR 93
 
Name Accession Description Interval E-value
MIF pfam01187
Macrophage migration inhibitory factor (MIF);
2-95 1.93e-50

Macrophage migration inhibitory factor (MIF);


Pssm-ID: 395945  Cd Length: 114  Bit Score: 156.06  E-value: 1.93e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194382208    2 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGtAEDNRSHSAHF 81
Cdd:pfam01187   1 PMFTIDTNLPANSVPAGLEKRLTAALAKALGKPADRIAVHIRPGQAMVFGGSTDPCAVCSIKSIGVVG-AEQNRSHSALL 79

                          90
                  ....*....|....
gi 194382208   82 FEFLTKELALGQDR 95
Cdd:pfam01187  80 FKFLTKELGLPKDR 93
PTZ00397 PTZ00397
macrophage migration inhibition factor-like protein; Provisional
 1-95 5.35e-03

macrophage migration inhibition factor-like protein; Provisional


Pssm-ID: 240401  Cd Length: 116  Bit Score: 34.42  E-value: 5.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194382208   1 MPFLELDTNlpANRVPAGLEKRLC---AAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVgTAEDNRSH 77
Cdd:PTZ00397   1 MPCCQVSTN--VNATDDQADAALSdieNAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGI-SRSNNSSI 77

                         90
                 ....*....|....*...
gi 194382208  78 SAHFFEFLTKELALGQDR 95
Cdd:PTZ00397  78 AAAITKILASHLKVKSER 95
 
Name Accession Description Interval E-value
MIF pfam01187
Macrophage migration inhibitory factor (MIF);
2-95 1.93e-50

Macrophage migration inhibitory factor (MIF);


Pssm-ID: 395945  Cd Length: 114  Bit Score: 156.06  E-value: 1.93e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194382208    2 PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGtAEDNRSHSAHF 81
Cdd:pfam01187   1 PMFTIDTNLPANSVPAGLEKRLTAALAKALGKPADRIAVHIRPGQAMVFGGSTDPCAVCSIKSIGVVG-AEQNRSHSALL 79

                          90
                  ....*....|....
gi 194382208   82 FEFLTKELALGQDR 95
Cdd:pfam01187  80 FKFLTKELGLPKDR 93
PTZ00397 PTZ00397
macrophage migration inhibition factor-like protein; Provisional
 1-95 5.35e-03

macrophage migration inhibition factor-like protein; Provisional


Pssm-ID: 240401  Cd Length: 116  Bit Score: 34.42  E-value: 5.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194382208   1 MPFLELDTNlpANRVPAGLEKRLC---AAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVgTAEDNRSH 77
Cdd:PTZ00397   1 MPCCQVSTN--VNATDDQADAALSdieNAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGI-SRSNNSSI 77

                         90
                 ....*....|....*...
gi 194382208  78 SAHFFEFLTKELALGQDR 95
Cdd:PTZ00397  78 AAAITKILASHLKVKSER 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH