3KX2


Conserved Protein Domain Family
HA2
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smart00847: HA2 
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Helicase associated domain (HA2) Add an annotation
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
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Statistics
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PSSM-Id: 214852
Aligned: 452 rows
Threshold Bit Score: 38.7885
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3KX2_B        500 YLACLDDEG---NLTPLGRLASQFPLDPMLA----VMLIGSFeF------------QCSQEILTI------VAMLSVPNv 554  Saccharomyces...
XP_001708852  459 ALSIVDANG---NLTEAGALTFEFSVMFQHGrmlaEVILDARhNnal-------alSVYKELIVI------ISCIETFI- 521  Giardia lambl...
XP_001351178 1123 KVKAVIKIKdklVISIIGQIMIRFNLSINLC----RLLLYGVlLd-----------VTFDTIILIg----iLNTNDIFP- 1182 Plasmodium fa...
YP_942038     394 VLGLLDAQN---KITKQGTRALKMGLDPRLA----SMLLSCQsTlek------riaCVLGALLSErdilfnAGSSDIIE- 459  Psychromonas ...
ZP_01972521    80 RLGLLda---rtQITAAGKEAHLLGVEPRIA----AMLLSADrLges-------alqSALALTVL------LEEPERQV- 138  Vibrio choler...
NP_760540     405 QLGLIsg----hQLTSEGQLAQRLGVEPRIA----AMLIGAQqRdet-------lfaSALAVAVM------LEEPERNI- 462  Vibrio vulnif...
ZP_05776300    30 SLGLIte---qgQLTAEGKQAHDLGVEPRAA----AMLIKSQsHsdk-------mvnVALAAVAL------IEEPERNV- 88   Vibrio paraha...
YP_001446616  405 SLGLLte---qgQLTSAGKTAHALGVEPRSA----AMLIQTQqHsek-------mlnTALAAVAL------IEEPERNV- 463  Vibrio harvey...
YP_131276     402 QLGIMdq---rfQLTDVGKQTQTMGTDPRHA----VMLIAAQqFdanhtsgstlamTTAALLVAL------LEDPPRGM- 467  Photobacteriu...
YP_205546     394 QLGQLdt---qgQLTVFGEQSQHLGMDPRLS----TILLRAKeMsla-------hlnTALFLLPI------IEEPAKSI- 452  Vibrio fische...

3KX2_B        555 fI--------RPT-----------KDKKRADDAKNIFAHPD-----GDHITLL 583  Saccharomyces cerevisiae S288c
XP_001708852  522 -Nt---------------------DISIQWSASEKAIVQPl----rSDHLAFL 548  Giardia lamblia ATCC 50803
XP_001351178 1183 -Nin----lySSKniy------syAVSLEICSKQKAYFDGnt---ySEPIMLR 1221 Plasmodium falciparum 3D7
YP_942038     460 -RamlfndylADRkalkanrniniGVVEQVVTLAKSFAKSLglsslGEPVSLT 511  Psychromonas ingrahamii 37
ZP_01972521   139 -------------------------I--DVQHSLHRWQQGrhp-kqKLLIQRA 163  Vibrio cholerae NCTC 8457
NP_760540     463 -------------------------S--NVCHSLHRWQQSkhg-ktTLLTQRa 487  Vibrio vulnificus CMCP6
ZP_05776300    89 -------------------------T--NIAHSLHRWLSGshp-kkTLLLKRA 113  Vibrio parahaemolyticus K5030
YP_001446616  464 -------------------------T--NVAHSLHRWVSGtht-kkAILHKRS 488  Vibrio harveyi ATCC BAA-1116
YP_131276     468 -------------------------NSPDLHFQLNLLESGklp-raRQYQLRA 494  Photobacterium profundum SS9
YP_205546     453 -------------------------KSKDVSYHLSLLldgkypksnyyhqrah 480  Vibrio fischeri ES114
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