6EI9,4YCO


Conserved Protein Domain Family
Dus

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pfam01207: Dus 
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Dihydrouridine synthase (Dus)
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Statistics
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PSSM-Id: 426126
Aligned: 15 rows
Threshold Bit Score: 326.205
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6EI9_B                    32 IAA-PMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEP------GIRTVQIAGSDPKEMADAAR 103 Esc...
P53759                    31 RIVaPMVDQSELAWRILSRRYGAT-LAYTPMLHAKLFATSKKYREDNWSSLDGSsv---dRPLVVQFCANDPEYLLAAAK 106 Sac...
Q08111                    15 LLA-PMAGITDLPFRRMVARFGAG-LVVSEMVASGEMLTAKPSVRAKAQAELTAg-----LPTSVQLAGREAAPMAEAAK 87  Rho...
PRJNA391730:Sp245p_15640  15 ILA-PMSGVTDLPFRRLVKQSGCG-LVVSEMVASQAMIRENRQTLRMVECEPEQ------FPMAVQLAGCEPDVMAEAAK 86 
Q55724                    45 LQS-PLSGVTDLVFRRLVRRYAPQaMLYTEMVSATEIHHLRTLPQVMEIDPREN-------PISIQLFDCRPDFMAEAAQ 116 Syn...
4YCO_A                    10 LLA-PMEGVLDSLVRELLTEVNDYdLCITEFVRVVDQLLPVKVFHRICPELQNAsrtpsgTLVRVQLLGQFPQWLAENAA 88  Esc...
P44606                     4 ILA-PMQGVLDPFVRELLTEVNDYdLCITEFVRVVDQLLPEKVFYRLCPELKNQgftssgTPVRVQLLGQHPKCLAENAI 82  Hae...
P72872                    14 SVA-PMMDHTDRHFRYFLRQLTRHtLLYTEMITAQAILHGDRQRLLNFSPEEKP--------VALQLGGDDPQLLAECAR 84  Syn...
P44794                    14 SVA-PMLDWTTRHCRYFHRQFSKHaLLYTEMVTAPAIIHA-KYDHLDFDLQENP--------VALQLGGSDPEQLKYCAK 83  Hae...
P32695                    29 sVA-PMLDWTDRHCRYFLRLLSRNtLLYTEMVTTGAIIHG-KGDYLAYSEEEHP--------VALQLGGSDPAALAQCAK 98  Esc...
6EI9_B                   104 INVEsGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVD--VPVTLKIRTGWAp--eHRNCEEIAQLAED 179 Esc...
P53759                   107 LVED-KCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLHKNLK--VPVTAKIRIFDD----CEKSLNYAKMVLD 179 Sac...
Q08111                    88 IVADmGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLIEAVVGAVD--LPVTLKMRLGWDe--dQLNAAEIAARAEA 163 Rho...
PRJNA391730:Sp245p_15640  87 LNEDrGAAIIDINFGCPVKKVVNGHAGSSLMRDEALAARILEATAKAVS--IPVTLKMRKGWDd--nSLNAPRLARIAEE 162
Q55724                   117 KAVAqGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEAIVKTVVAAVD--VPVTVKTRLGWDd--gEINIVEFAQRLQD 192 Syn...
4YCO_A                    89 RAVElGSWGVDLNCGAPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPahLPVSVKVRLGWDs--gEK-KFEIADAVQQ 165 Esc...
P44606                    83 RAIDlGSHGIDLNCGCPSKTVNGSNGGAALLKQPELIYRATQALRRAVPseFPVSVKVRLGWDd--iSQ-AFEIADAVEQ 159 Hae...
P72872                    85 IGQDwGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSAMQKAVE--IPVTVKHRIGIDhrdsYEDLVHFVEIVAN 162 Syn...
P44794                    84 LAEErGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVK--IPVTVKTRIGIDeldsYEFLCDFIEKVQG 161 Hae...
P32695                    99 LAEArGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS--IPVTVKTRIGIDdqdsYEFLCDFINTVSG 176 Esc...
6EI9_B                   180 CG-IQALTIHGR-------TRACLFNG--EAEYDSIRAVKQKVS--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 247 Esc...
P53759                   180 AG-AQFLTVHGR-------VREQKGQKtgLANWETIKYLRDNLPkeTVFFANGNILYPEDISRCMEHIGADAVMSAEGNL 251 Sac...
Q08111                   164 AG-VKMIVIHGR-------TRMQFYTG--AADWRAIAAVRAAVS--VPVVANGDITDAASARRALDQSGAAGVMVGRGAQ 231 Rho...
PRJNA391730:Sp245p_15640 163 CG-IKLVTVHGR-------TREQFYNG--TADWSFIRSVKEAVS--IPVVVNGDITSFDAVDRALAESGADGVMIGRGAY 230
Q55724                   193 AG-AQMLTLHGR-------TRAQGYNG--RARWQWIAKVKQALT--IPVIANGDIFSVEAAIACLEETGADGVMCSRGSL 260 Syn...
4YCO_A                   166 AG-ATELVVHGR-------TKEQGYRAe-HIDWQAIGDIRQRLN--IPVIANGEIWDWQSAQQCMAISGCDAVMIGRGAL 234 Esc...
P44606                   160 GG-ATEITVHGR-------TKADGYRAd-RINWKKISEVRERLS--IPVIANGEIWHWQDGQDCLSQTGCQDLMVGRGAL 228 Hae...
P72872                   163 AG-CQRFTVHARkawlqglSPKENRTIp-PLRYEDVYQLKKDFPq-LLIEINGGITQTEQIQQHLSH--VDAVMVGRAAY 237 Syn...
P44794                   162 KG-CQEFIIHARkawlsglSPKENREIp-PLDYIRVYQLKRDFPh-LTIAINGGIKTIEEMKQHLQY--VDGVMVGREAY 236 Hae...
P32695                   177 KGeCEMFIIHARkawlsglSPKENREIp-PLDYPRVYQLKRDFPh-LTMSINGGIKSLEEAKAHLQH--MDGVMVGREAY 252 Esc...
6EI9_B                   248 GRPWIFREiQhYLDTGELLPPLP-LAEV----KRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE---HAPNDQFRRTF 319 Esc...
P53759                   252 YNPGVFNVgQtKNKEKIFPRVDKiIREYfqivKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTlatMNAKATWEEWE 331 Sac...
Q08111                   232 GAPWRLAQ-IaAALFGKADPKLPsGSEF----SDFVSEHYEAILSFYGRDLGLRIARKHLGWYAE----AAAA-PLRAEM 301 Rho...
PRJNA391730:Sp245p_15640 231 GRPWFPAQvMhYIRTGERLPDPP-LHEQ----LDTLLEHYDAMLTHYGVEGGLRVARKHISWYSTG---LRDSAEFRSEV 302
Q55724                   261 GYPFLVGEiEhFFKTGEKRKAPT-VAEK----LTCAQEHLQMLWEYKG-QRGLFQARKHLAWYCKD---FPGAAALREQL 331 Syn...
4YCO_A                   235 NIPNLS-----RVVK-YNEPRMP--WPE----VVALLQKYTRLEKQG--DTGLYHVARIKQWLSY----LRKE--Y-DEA 293 Esc...
P44606                   229 NIPNLS-----HVLK-SNAEKMP--WYE----IQKILQKYANVENEY--DSGFYHVARIKQWLRY----LNKE--Y-NEA 287 Hae...
P72872                   238 ENPYLFA----TVDRDIYHKTNL-VPSR----AEIIERMLPYVEERLRHGDRLNQITRHLLSLFNG---QPRAKFWRRTL 305 Syn...
P44794                   237 QNPSLLG----QIDQALFDPNAP-IVTA----HEAVESMLPYIEQQLSQGIHLNHIVRHILGAFQN---CKGARQWRRYL 304 Hae...
P32695                   253 QNPGILA----AVDREIFGSSDT-DADP----VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG---IPGARQWRRYL 320 Esc...
6EI9_B                   320 NAIEDASEQ---LEALE---AYFENFA 340 Escherichia coli
P53759                   332 EQVVKPVEKvvqEIFEQpdiAIKDEIT 358 Saccharomyces cerevisiae S288C
Q08111                   302 MRATDP------AATL----ALIRSAF 318 Rhodobacter capsulatus SB 1003
PRJNA391730:Sp245p_15640 303 NRMSDPERV---RGFIR---DFyapai 323
Q55724                   332 FQINSVQEG---KDLLDq--AISTAKL 353 Synechocystis sp. PCC 6803 substr. Kazusa
4YCO_A                   294 TELFQHVRV---LNNSP---DIARAIQ 314 Escherichia coli K-12
P44606                   288 NQVFDKIKT---CQTAE---DLKLRLN 308 Haemophilus influenzae Rd KW20
P72872                   306 SDSTLLASA---GPELLq--TALQAQK 327 Synechocystis sp. PCC 6803 substr. Kazusa
P44794                   305 SENAFKQGA---GIEVVe--TALSFVE 326 Haemophilus influenzae Rd KW20
P32695                   321 SENAHKAGA---DINVLe--HALKLva 342 Escherichia coli K-12
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