5YBB


Conserved Protein Domain Family
HsdM_N

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pfam12161: HsdM_N, with user query added  
HsdM N-terminal domain
This domain is found at the N-terminus of the methylase subunit of Type I DNA methyltransferases. This domain family is found in bacteria and archaea, and is typically between 123 and 138 amino acids in length. The family is found in association with pfam02384. Mutations in this region of EcoKI methyltransferase abolish the normally strong preference of this system for methylating hemimethylated substrate. The structure of this domain has been shown to be all alpha-helical.
Statistics
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PSSM-Id: 463478
Aligned: 59 rows
Threshold Bit Score: 59.6184
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

query           7 IVQKLWNLCNILRDD.[1].V.[4].YV.[1].ELTYLLFLKMA     EETKKEE.[ 1].IPKDYRWKS.[ 4].EG 64 
jgi:Nmar_0606  12 LEQRLFDAADILRKH     L.[4].NR.[1].PVLTLLFLKRL.[4].EENVEKL.[21].LPEDTRWNK.[ 5].ED 93 
WP_011940824    9 LSSLLFRACDDLRGN     M.[4].YK.[1].YIFGMLFLKRL.[4].DQEREQL.[27].VPEEAHWSN.[ 5].TN 96  Geobacter uraniiredu...
Q0AUQ5         11 LEHFLLKAADILRGK     M.[4].FK.[1].FIFGMLFIKRL.[4].DLKRQKL.[30].VPVRARWHE.[17].YD 113 Syntrophomonas wolfe...
Q0ABD4          8 LERHLFKAADILRGR     M.[4].FK.[1].YIFGMLFLKRC.[4].DQRREEV.[29].VPPQSRWDH.[ 6].QG 98  Alkalilimnicola ehrl...
jgi:Dole_2925   7 LGSTLFGMADILRDK     V.[2].YK.[1].YILSLLFFKRL.[4].TWESENG.[28].IPDGCFWGD.[ 6].DK 94 
jgi:Pnap_4916   8 LANFVWSVADLLRGD     Y.[4].YG.[1].VILPLTLLRRL.[4].EGTKEQV.[30].NTSPFTLQT.[ 3].DQ 96 
Q1H242          1 MEQMLWDAACSIRGE     K.[4].FK.[1].YLLPLLFLKRL.[4].DDEIERL.[24].LPPEARWAV.[20].RD 100 Methylobacillus flag...
Q6L2Y8         91 LESMLKKAADLIRTR     V.[1].YK     YILILLFLKRI.[4].EEEYNKA.[27].LPEDALWNN.[ 5].NT 174 Picrophilus torridus

query          65 .[2].LLQHYREMLVKL.[1].AAK.[3].VQAIF.[ 5].SLRQPRHLHTLVTNI 110
jgi:Nmar_0606  94      VGSKIIEICKKI     EDA.[4].LGGTM.[ 8].EKYPDTALVKLIDHF 140
WP_011940824   97      VGTNLNKALEAL     EDA.[4].LQDVL.[11].RSLDDDTLANFIQNF 146 Geobacter uraniireducens
Q0AUQ5        114      IGNMLNKAIAAI     EEE.[3].LAGVL.[12].TKIPDQKWKDLIDHF 163 Syntrophomonas wolfei subsp. wolfei str. Go...
Q0ABD4         99      VGSALNKALAGL     EEH.[3].LAGVL.[11].TTLPDRKLRDLIAHF 147 Alkalilimnicola ehrlichii MLHE-1
jgi:Dole_2925  95      KNDALNKAVNAI     ADS.[3].LKGVI.[15].KKLHPEVLSPLINYL 147
jgi:Pnap_4916  97 .[2].IRQNLTAYIGEF     SAD     ARDVF.[10].ELDDKDLLFLLMQKF 143
Q1H242        101      IGEHLTKAVRAV     VKQ.[3].LSGVI.[12].RDINPAKLRGVVETF 150 Methylobacillus flagellatus KT
Q6L2Y8        175      LPEKLARALKTI     AEM.[3].LKNVI.[10].NSENSQILRQLVELF 222 Picrophilus torridus
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