3VJ6,1K8D,5J6G,5KD7,5W1W,2D31,1NEZ,5YMW,1ZAG,1FRT


Conserved Protein Domain Family
MHC_I

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pfam00129: MHC_I, with user query added  
Class I Histocompatibility antigen, domains alpha 1 and 2
Statistics
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PSSM-Id: 395078
Aligned: 19 rows
Threshold Bit Score: 238.832
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

query   23 RLLPLGYVDDQLFVFYDH     ESRRVEPRTPWVS.[1].RISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK 90 
P16215  42 RYIAVEYVDDTQFLRFDS.[2].AIPRMEPREPWVE     QEGPQYWERTTGYAKANAQTDRVALRNLLRRYNQSE 110 chimpanzee
P30383  45 RFIAVGYVDDTQFVRFDS.[2].ANTRGEPRAPWVE     QEGPEYWDRETQKYKRQAQTDRVSLRKLRGYYNQSE 113 western lowland gorilla
P13752  42 RYLEVGYVDDTQFVQFDS.[2].PNPRMEPRARWVE     QEGPEYWDRNTRNAKGNAQSFRVNLNTLRGYYNQSE 110 cattle
P15978  45 RFISVGYVDDTQFVRYDS.[2].ENPRYEPRARWME     REGPEYWEEQTLVAKGQELDYRVSLRNLLSYYNQSE 113 Norway rat
1K8D_A  21 WFISVGYVDDTQFVRFDS.[2].ENPRMEPRARWME     QEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQSK 89  house mouse
5J6G_C  22 RFIIVGYVDDTQFVRFDS.[2].ETPRMEPRAPWME     QEGPEYWERETQRAKGNEQSFHVSLRTLLGYYNQSE 90  house mouse
5W1W_K  21 RFISVGYVDDTQFVRFDN.[2].ASPRMVPRAPWME     QEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSE 89  human
2D31_D  21 RFIAMGYVDDTQFVRFDS.[2].ACPRMEPRAPWVE     QEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSE 89  human

query   91      ESHTLQVILGCEMQEDN     STEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQ.[1]. 156
P16215 111 .[1].GSHTLQGMNGCDMGPDG.[1].LLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF      177 chimpanzee
P30383 114 .[1].GSHTFQRMYGCDVGPDG.[1].LQRGYDQLAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARWAERQ      180 western lowland gorilla
P13752 111 .[1].GSHTLQWMSGCDVGPDG.[1].LRRGFMQYGYDGRDYLALNEDLRSWTAGETEAQITKRKWEAAGYAEVQ      177 cattle
P15978 114 .[1].GSHTIQRMYGCDVGSDG.[1].LLRGYEQHAYDGRDYIALNEDLKTWAVADFAAWITRSKWQRNGAAERS      180 Norway rat
1K8D_A  90 .[1].GSHTLQWMYGCDMGSDG.[1].LLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKD      156 house mouse
5J6G_C  91 .[1].GSHTIQWMYGCKVGSDG.[1].FLRGYLQYAYDGRDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEYY      157 house mouse
5W1W_K  90 .[1].GSHTLQWMHGCELGPDR.[1].FLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQ      156 human
2D31_D  90 .[1].SSHTLQWMIGCDLGSDG.[1].LLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQR      156 human

query  157 RAYLERDCPAQLQQLLELGRGVL 179
P16215 178 RTYLEGECLELLRRYLENGKETL 200 chimpanzee
P30383 181 RAYLEGLCVEWLRRYLENGKETL 203 western lowland gorilla
P13752 178 RNYLEGECVEWLRRYLENGKDTL 200 cattle
P15978 181 RAYLEGTCVEWLLRYLERGKETL 203 Norway rat
1K8D_A 157 QAYLEGTCMQSLRRYLELGKETL 179 house mouse
5J6G_C 158 RAYLEAECVEWLLRYLELGKETL 180 house mouse
5W1W_K 157 RAYLEDTCVEWLHKYLEKGKETL 179 human
2D31_D 157 RAYLEGTCVEWLHRYLENGKEML 179 human
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