5KD7: Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a Variant of Peptide (PV9) of HIV gp120 MN Isolate (IGPGRAFYV)

PDB ID: 5KD7Download
MMDB ID: 155497
PDB Deposition Date: 2016/6/7
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.35  Å
Source Organism:
HIV-1 M:B_MN▼
Similar Structures:
Biological Unit for 5KD7: dodecameric; determined by author and by software (PISA)
Molecular Components in 5KD7
Label Count Molecule
Proteins (12 molecules)
4
H-2 Class I Histocompatibility Antigen, D-D Alpha Chain
Molecule annotation
4
Beta-2-microglobulin
Molecule annotation
4
Peptide (Pv9) of HIV Gp120 MN Isolate (Igpgrafyv)
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
7
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
2
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303