1PZN,4DC9,1XU4,2ZUB,2DFL,2BKE,2GDJ,1T4G,2F1H,3NTU,3ETL,4A6P,4B2I,5J4H,5JEE,5LBI,5L8V,5JEC,5JED,5LB4,5KDD


Conserved Protein Domain Family
archRadA

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cd19515: archRadA 
Click on image for an interactive view with Cn3D
archaeal recombinase Rad51/RadA
This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Statistics
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PSSM-Id: 410923
Aligned: 32 rows
Threshold Bit Score: 404.823
Created: 16-May-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindinghexamer
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:1XU4; Methanococcus voltae RadA with bound ATP, contacts at 4A
    View structure with Cn3D
  • Comment:contains the Walker A and Walker B motifs

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1                                #######                        #      #              
1PZN_A    113 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVXVQ.[ 9].GSVIWIDTENTFRPERIREIAQ.[5].PDE 195 Pyrococcus furiosus
4DC9_A     24 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ.[19].PKAVYIDTEGTFRPERIMQMAE.[5].GQT 116 Methanococcus voltae
1XU4_A     80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ.[19].PKAVYIDTEGTFRPERIMQMAE.[5].GQT 172 Methanococcus voltae
2GDJ_A     22 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ.[19].PKAVYIDTEGTFRPERIMQMAE.[5].GQT 114 Methanococcus voltae
1T4G_A     80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ.[19].PKAVYIDTEGTFRPERIMQMAE.[5].GQT 172 Methanococcus voltae
2F1H_A     80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ.[19].PKAVYIDTDGTFRPERIMQMAE.[5].GQT 172 Methanococcus voltae
3NTU_A     77 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ.[19].PKAVYIDTEGTFRPERIMQMAE.[5].GQT 169 Methanococcus voltae PS
3ETL_A     80 LSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQ.[19].PKAVYIDTEGTFRPERVVQMAE.[5].GQT 172 Methanococcus maripaludis
ABZ07424   87 ITTGTECLDLLLEGGLETQALTEVYGEFGSGKTQFCHTMCVTVQ.[ 9].GTVLYIDTENTFRPERIVSIAK.[5].PEK 169 uncultured marine crena...
A5UMW0     79 ISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELAVTVQ.[ 9].GECVFIDTENTFRPERIEQIAN.[5].IDE 161 Methanobrevibacter smit...

Feature 1                                                                                   
1PZN_A    196 VLKHIYVARAFNSNHQXLLVQQAEDKIK.[7].PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY 275 Pyrococcus furiosus
4DC9_A    117 VLDNTFVARAYNSDMQMLFAEKIEDLIQ.[3].NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLF 192 Methanococcus voltae
1XU4_A    173 VLDNTFVARAYNSDMQMLFAEKIEDLIQ.[3].NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLF 248 Methanococcus voltae
2GDJ_A    115 VLDNTFVARAYNSDMQMLFAEKIEDLIQ.[3].NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLF 190 Methanococcus voltae
1T4G_A    173 VLDNTFVARAYNSDMQMLFAEKIEDLIQ.[3].NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLF 248 Methanococcus voltae
2F1H_A    173 VLDNTFVARAYNSDMQMLFAEKIEDLIQ.[3].NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLF 248 Methanococcus voltae
3NTU_A    170 VLDNTFVARAYNSDMQMLFAEKIEDLIQ.[3].NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLF 245 Methanococcus voltae PS
3ETL_A    173 VLDNTFVARAYNSDMQMLFAEKIEDLIK.[3].NIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLY 248 Methanococcus maripaludis
ABZ07424  170 VLDRIIVARAYNSAHQTLILEEASQMIK.[2].NVKLLIVDSAVGLFRAEYLGRGTLAIRQQRLNKFVHLLVRIAEVY 244 uncultured marine crenarc...
A5UMW0    162 VLQKIHVARAFNSSHQILMAEKINELIQ.[3].NIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHALQQIANTY 237 Methanobrevibacter smithi...

Feature 1                                                  #                      ###     
1PZN_A    276 .[1].IAVFVTNQV.[12].RPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHL.[1].EGEAVFSITEKGIED 349 Pyrococcus furiosus
4DC9_A    193 .[1].CVVLVTNQV.[12].QAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHL.[1].DAEAIFRITEKGIQD 266 Methanococcus voltae
1XU4_A    249 .[1].CVVLVTNQV.[12].QAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHL.[1].DAEAIFRITEKGIQD 322 Methanococcus voltae
2GDJ_A    191 .[1].CVVLVTNQV.[12].QAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHL.[1].DAEAIFRITEKGIQD 264 Methanococcus voltae
1T4G_A    249 .[1].CVVLVTNQV.[12].QAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHL.[1].DAEAIFRITEKGIQD 322 Methanococcus voltae
2F1H_A    249 .[1].CVVLVTNQV.[12].QAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHL.[1].DAEAIFRITEKGIQD 322 Methanococcus voltae
3NTU_A    246 .[1].CVVLVTNQV.[12].QAIGGHIVGHAATFRFFVRKGKGDKRVAKLYKSPHL.[1].DAEAIFRITEKGIQD 319 Methanococcus voltae PS
3ETL_A    249 .[1].CIVLVTNQV.[12].QAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHL.[1].DSEAVFRITEKGIQD 322 Methanococcus maripaludis
ABZ07424  245 .[1].CAALATNQV.[11].TRPIGGNVVAHTSTYRIYFKKSGKKRIARMVDSPHH.[1].EQEVIFALGEAGVID 317 uncultured marine crenarcha...
A5UMW0    238 .[1].VAVFITNQV.[12].KAIGGHVLGHASTYRIWLKKGLAGKRIARLVDSPHL.[1].EGECVFKIKTEGIVD 311 Methanobrevibacter smithii ...

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