1WHX


Conserved Protein Domain Family
RRM4_RBM19_RRM3_MRD1

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cd12317: RRM4_RBM19_RRM3_MRD1 
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RNA recognition motif 4 (RRM4) found in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 (RRM3) found in multiple RNA-binding domain-containing protein 1 (MRD1)
This subfamily corresponds to the RRM4 of RBM19 and the RRM3 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well conserved in yeast and its homologues exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). MRD1 is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events.
Statistics
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PSSM-Id: 409756
Aligned: 18 rows
Threshold Bit Score: 106.188
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

1WHX_A         11 TVILAKNLP.[1].GTLAAEIQETFSRFG.[ 1].LGRVLLPE.[2].ITAIVEFL.[3].EARKAFRHL.[1].YSKFH 72   house mouse
Q06106        532 KVILVKNFP.[1].GTTREELGEMFLPYG.[ 1].LERLLMPP.[2].TIAIVQFR.[3].SARAAFTKL.[1].YKRFK 593  Saccharomyces cere...
XP_002289789  531 TTILVKNLP.[1].DTSLEELTKAFHSIG.[ 3].PRRILLPP.[2].TAALVEYD.[3].DARRAFRRL.[1].YKKFK 594  Thalassiosira pseu...
XP_001324476  378 TVLIIKNLR.[1].ETTEEELRGIFASKG.[ 1].LVRFVLAP.[2].SVAIVEFA.[3].DARKAFNSL.[1].YRLLH 439  Trichomonas vagina...
XP_002784080  473 DTLILKHLP.[2].SVTLAELRAVIGKYV.[10].LQKLLLAP.[2].TVAIAQFV.[3].TAQHAFKKL.[1].YRRFK 544  Perkinsus marinus ...
XP_655058     370 NIIIVKNIA.[1].SAIELEVKSLFEKFG.[ 1].LKQFLMPK.[2].ALALVEFE.[3].DAKTAFKRL.[1].YSRYR 431  Entamoeba histolyt...
CBY24581     1349 KIILVKNLP.[1].GALPTELRFKFEKFG.[ 1].LGRIIMPP.[2].LAALIEFD.[3].NAKRAFKAV.[1].YSRFG 1410 Oikopleura dioica
NP_502432     483 TVMLAKNLP.[1].GVESEELQRMFEKFG.[ 1].CTKVLMPT.[3].VSALVIMG.[3].DAKKAFRAL.[1].YSRFR 545  nematode
EGR30188      104 NIILVKNLP.[1].KIQEDGLSELFERFG.[ 1].VTRLLISP.[2].SIGIVQFE.[3].HAQNAFEKL.[1].YFSLK 165  Ichthyophthirius m...
EFA76199      515 TVILVKNIP.[1].KTTQTELETMFSRFG.[ 1].LARVLLTP.[2].TLALLEFY.[3].EAKLAFQNL.[1].YTKFH 576  Polysphondylium pa...

1WHX_A         73 HVPLYLEWAP 82   house mouse
Q06106        594 DGIIYLERGP 603  Saccharomyces cerevisiae S288c
XP_002289789  595 HVPLYLEWAP 604  Thalassiosira pseudonana CCMP1335
XP_001324476  440 DTPIYIQWAP 449  Trichomonas vaginalis G3
XP_002784080  545 NAPLYVEWAP 554  Perkinsus marinus ATCC 50983
XP_655058     432 GIPLYLEWAP 441  Entamoeba histolytica HM-1:IMSS
CBY24581     1411 DRPLYLEWAP 1420 Oikopleura dioica
NP_502432     546 SQPLYLEWAP 555  nematode
EGR30188      166 NCPLYLEWAP 175  Ichthyophthirius multifiliis
EFA76199      577 HVPLYLEWAP 586  Polysphondylium pallidum PN500
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