Conserved Protein Domain Family
LA_like_plant

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cd08030: LA_like_plant 
La-motif domain of plant proteins similar to the La autoantigen
This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Statistics
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PSSM-Id: 153399
Aligned: 9 rows
Threshold Bit Score: 114.794
Created: 10-Sep-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1               #  ##        #  ##      #                  ###                         
AAG52256       9 TAKKLLTQVEFYFS.[1].SNLPTD     GFLN.[ 8].GLVSLPLVCSFSRMRNLLGLG.[11].VEEVANLLRTS 84  thale cress
CAL50390      26 TKEKVVKQIEFYFC.[1].SNLPRD     SFLL.[12].GAVDLALIAGFSRMRDILAPY.[ 8].IERIAAALEGS 102 Ostreococcus tauri
XP_001417787  25 DGAKICRQVSFYFS.[1].SNIGRD     DYLL.[12].GAVELATIARFQKMRELLAPY.[ 9].MPKVAEALSQS 102 Ostreococcus lucimarin...
ACO68563      23 TKTKLLNQIEFYFS.[1].SNLPRD     KFLR.[ 8].GFVDIALLVTFSRVRSLLGSY.[ 8].VAAVAGALDTS 95  Micromonas sp. RCC299
XP_001697144   9 LKGKVVRQIEFYFS.[1].SNLPKD     KFLK.[ 8].GFVPLNVICAFQRMRDLIGVK.[11].LQQVAEALAGS 84  Chlamydomonas reinhardtii
XP_001773821  11 TTAKVLRQMEFYFS.[1].SNLPGD     AFLL.[ 8].DMVELSLLCTFQKMRKHLGVN.[11].LAGVAEVLRNK 86  Physcomitrella patens ...
O65529        10 TAKTVLRQVEFYFS.[1].SNLPID     DFLK.[ 8].GLVSLALICSFSKMRGYLKLG.[11].IKAVADTLRTS 85  thale cress
XP_002281653   2 ASEDFLFLYTRSFS.[4].QFKPKY.[2].DNVV.[ 2].SMVSLALICSFSRMRSHLNLG.[11].LKAVAEILRNS 76  wine grape
EEH59523      22 AKQKVKEQVEFYFS.[1].SNLPRD     KFLR.[ 8].GYVDISLLMTFSRLRTLLARV.[ 8].AVDVAALLETS 94  Micromonas pusilla CCM...

Feature 1                              
AAG52256      85 .[1].FLKVSN.[1].GQRIGR 98  thale cress
CAL50390     103 .[1].LVEATD     GKRVKR 115 Ostreococcus tauri
XP_001417787 103 .[1].IVEACE.[1].GTRVKR 116 Ostreococcus lucimarinus CCE9901
ACO68563      96 .[1].LLTVSC.[1].KQRVRR 109 Micromonas sp. RCC299
XP_001697144  85 .[1].SLEVDE.[1].KTKVKR 98  Chlamydomonas reinhardtii
XP_001773821  87 .[2].FLRVSE.[1].GKRVGR 101 Physcomitrella patens subsp. patens
O65529        86 .[1].ALKISD.[1].GKKVGR 99  thale cress
XP_002281653  77 .[1].TLKVSE.[1].GKKIGR 90  wine grape
EEH59523      95 .[1].VLAVST.[1].KRRVRR 108 Micromonas pusilla CCMP1545

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