4JVH,2MJH,4JVY


Conserved Protein Domain Family
KH-I_Hqk_like

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cd22383: KH-I_Hqk_like 
type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) family
The Hqk family includes Hqk and protein held out wings (how) found in Drosophila. Hqk, also called HqkI, is an RNA-binding protein that plays a central role in myelinization. It binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence and regulates target mRNA stability. It acts by regulating pre-mRNA splicing, mRNA export and protein translation. Hqk is a regulator of oligodendrocyte differentiation and maturation in the brain that may play a role in myelin and oligodendrocyte dysfunction in schizophrenia. How, also called KH domain protein KH93F, or protein muscle-specific, or protein Struthio, or protein wings held out (who), or Quaking-related 93F (qkr93F), is an RNA-binding protein involved in the control of muscular and cardiac activity. It is required for integrin-mediated cell-adhesion in wing blade. It plays essential roles during embryogenesis, in late stages of somatic muscle development, for myotube migration and during metamorphosis for muscle reorganization.
Statistics
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PSSM-Id: 411811
Aligned: 13 rows
Threshold Bit Score: 154.051
Created: 19-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA bindingGXXG motif
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:4JVH: Homo sapiens Quaking protein in complex with RNA; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        # ### #####   #        #####   # #              #               
4JVH_A        76 QLQEKLYVPVKEYPdFNFVGRILGPRGlTAKQLEAEtGCKIXVRGKGSXRDKKKEeqnr-gkpNWEHLNEDLHVLITVED 154 human
2MJH_A        10 SITEKIYVPKNEYPdYNFVGRILGPRGmTAKQLEQDtGCKIMVRGKGSMRDKSKEsahr-gkaNWEHLEDDLHVLVQCED 88  Caenorhabditis ...
4JVY_A        63 SITEKIYVPKNEYPdYNFVGRILGPRGmTAKQLEQDtGCKIMVRGKGSMRDKSKEsahr-gkaNWEHLEDDLHVLVQCED 141 Caenorhabditis ...
Q17339       204 SITEKIYVPKNEYPdYNFVGRILGPRGmTAKQLEQDtGCKIMVRGKGSMRDKSKEsahr-gkaNWEHLEDDLHVLVQCED 282 Caenorhabditis ...
O01367       136 TMNEKVYVPVREHPdFNFVGRILGPRGmTAKQLEQEtGCKIMVRGKGSMRDKKKEdanr-gkpNWEHLSDDLHVLITVED 214 fruit fly
Q75GR5       133 KKILRLDVPVDSYPnFNFVGRILGPRGnSLKRVEAStGCRVFIRGKGSIKDPGKEdklr-gkpGYEHLSDPLHILIEAEF 211 Japanese rice
XP_002112445  71 QIIEKVFIPVNRFPnYNFVGRLLGPRGmTMRQLELNiGCKVKIRGKGSLRDRKREeqlr-gkqNWEHLQEELHVVIEVED 149 Trichoplax adha...
XP_009030890 250 SVSEKVLIPVHKYPdYNFVGRLLGPRGrTAKQFETDmECKIMIRGRGSLRDVAKVdikk-lktNQEFMNEDLHVLVTVED 328 Helobdella robusta
XP_013408009  84 QLSEKVFVPVKEHPeFNFVGRILGPQGhTIKELEKStGCRIMVRGRGSMRDKKKEeqyr-gkpNWEHLNEELHVLINVED 162 Lingula anatina
XP_018653311  77 NLQAKIYMPMDSTNnYNFVGRILGPHGsTAKCLQQFlGVKIMIRGRGSMRDQTKVganivrpnSEQHLNDNLHVLITVED 156 Schistosoma man...
PFX34577      73 KLSEKVYAPVKEYPkFNFVGRVIGPRGmTLREVESStGCKLLVRGKGSMKDKKLEeekr-gqpNYEHLEEDLHVLISVED 151 Stylophora pist...
KAA8498516   193 KKRVKLPVPADKYPdYNFVGRLLGPRGaTLKALERDtGCKIMIRGKGSIRKDKEMevrg-kpgWEHVFNEPLHVVVEAEN 271 Porphyridium pu...
OSX79482     376 KTSVKVYIPTRKYPnVNFIGLILGPRGnTHKRLEKDyGCSVAIRGKGSVKDGRHRg------pASAEDEDELHVVLSAEG 449 laver
Feature 1                              
4JVH_A       155 AqnRAEIKLKRAVEEVKKLLVP 176 human
2MJH_A        89 TenRVHIKLQAALEQVKKLLIP 110 Caenorhabditis elegans
4JVY_A       142 TenRVHIKLQAALEQVKKLLIP 163 Caenorhabditis elegans
Q17339       283 TenRVHIKLQAALEQVKKLLIP 304 Caenorhabditis elegans
O01367       215 TenRATVKLAQAVAEVQKLLVP 236 fruit fly
Q75GR5       212 PasIIDARLRHAQEVIEELLKP 233 Japanese rice
XP_002112445 150 TptRAQIKLEKAKDEINKLLIP 171 Trichoplax adhaerens
XP_009030890 329 TenRVHIKLRRAVEAIERFFIP 350 Helobdella robusta
XP_013408009 163 TktRAEMKLQRAVEEVRKLLVP 184 Lingula anatina
XP_018653311 157 YenRAKVRLEKASECISKFLQE 178 Schistosoma mansoni
PFX34577     152 TeeRAKLRLAKAVERAKDLLQP 173 Stylophora pistillata
KAA8498516   272 EeaVATRALNRAKEAVELLLVP 293 Porphyridium purpureum
OSX79482     450 A--DGAEKVAKCLERVKTLITP 469 laver

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