6ANU


Conserved Protein Domain Family
CH_beta_spectrin_rpt1

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cd21193: CH_beta_spectrin_rpt1 
first calponin homology (CH) domain found in the beta spectrin family
The beta spectrin family includes beta-I, -II, -III, -IV and -V spectrins. Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. Beta-I spectrin, also called spectrin beta chain, erythrocytic (SPTB), may be involved in anaemia pathogenesis. Beta-II spectrin, also called spectrin beta chain, non-erythrocytic 1 (SPTBN1), or fodrin beta chain, is a component of fodrin, which is the general spectrin-like protein that seems to be involved in secretion. Fodrin interacts with calmodulin in a calcium-dependent manner and is thus a candidate for the calcium-dependent movement of the cytoskeleton at the membrane. Beta-IV spectrin is also called spectrin, non-erythroid beta chain 3 (SPTBN3) or spectrin beta chain, non-erythrocytic 4 (SPTBN4). Its mutation associates with congenital myopathy, neuropathy, and central deafness. Beta-III spectrin is also called spectrin beta chain, non-erythrocytic 2 (SPTBN2), or spinocerebellar ataxia 5 protein (SCA5). Beta-V spectrin, also called spectrin beta chain, non-erythrocytic 5 (SPTBN5), is a mammalian ortholog of Drosophila beta H spectrin. Beta-III and Beta-V spectrins may play crucial roles as longer actin-membrane cross-linkers or fulfill the need for greater extensible flexibility than can be provided by the other smaller conventional spectrins. Members of this family contain two copies of the CH domain. This model corresponds to the first CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409042
Aligned: 15 rows
Threshold Bit Score: 206.378
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
actin binding
Conserved site includes 30 residues -Click on image for an interactive view with Cn3D
Feature 1:actin binding site [polypeptide binding site]
Evidence:
  • Structure:6ANU; Homo sapiens SPTBN2 in complex with F-actin, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  ##  ##  ##  #                                                     #  ##  #  
6ANU_f         43 FERSRIKALADEREAVQKKTFTKWVNSHLARvtcrVGDLYSDLRDGRNLLRLLEVLSGEILPKPtkgrMRIHCLENVDKA 122  human
CDS25643       19 YEQNTISRLQAEVSRVQKKTYTNWINIYLRPcnmeVTDLYNDLSDGKRLMQLLEVISNANLGKPnkgiLRVQKIENVGRA 98   Hymenolepis m...
XP_001743442    4 STERLVQELSAEREAMQKRTFTRWANAFLRDfdmvIEDLYTDLSDGVLLLKLLEAISGTELPKPargrLRIYKLENCNKA 83   Monosiga brev...
GBL80063        5 QPEAVVENLRQERLNVQKKTFTKWANVHLQKhglfIDDLFVDLGDGVKLMRLLESLTGEKLGKPakgsARINKIENVSRC 84   Araneus ventr...
RUS83162        9 FEKGRIKALQDERVYIQKKTFTKWANAFLEKvrmeIRDLFSDLADGKMLMKLLEIISGENLGRPnkgvLRVQKVENVNRC 88   eastern emera...
EFX84686       10 FEQGRIKVLQEERLHIQKKTFTKWMNSFLTKarmeVEDLFVDLADGKKLLKLLEIISGEKLAKPnngkMRVHKIENVNKS 89   common water ...
XP_030854994   13 FEKGRIHALQEERIAIQKKTFTKWINSHLAKanlhIQNLFEDLHDGKALMRLLEVISGESVGRPnhgkLRVQKMENINKA 92   purple sea ur...
XP_002732400    9 FEINRIKALREERMSIQKKTFTKWMNQFLEKanlhVSNLYTDLEDGKLLMKLLEIISGEPLGRPnrgiLRVQKIENLNRC 88   Saccoglossus ...
NP_741632     140 FERSRIRTLQDERVHIQKKTFTKWCNSFLNRasleIVDLFEDVGDGIMLMKLLEIISGDKLGKPnrgrMRVQKVENLNKV 219  Caenorhabditi...
XP_013406633    8 FEKGRIRALQEERILVQKKTFTNWINSFLMKadlkISEIFEDLSDGKLLLKLLEIISGETIGRAnrgtLRVQKVENLNKC 87   Lingula anatina
Feature 1             #    #########      ## ##  ##  ##
6ANU_f        123 LQFLKEQkVHLENMGSHDIVDGNHRLTLGLVWTIILR 159  human
CDS25643       99 LNFIKSK-VHLENIGAEDIVDGNPTLILGLIWTIILR 134  Hymenolepis microstoma
XP_001743442   84 LSFLKAKkVKLENISAENIVDGGSTLILGLMWTLILR 120  Monosiga brevicollis MX1
GBL80063       85 LAFLHSKkMRLENISSEDIVDGKPHLILGLLWTIILR 121  Araneus ventricosus
RUS83162       89 LKFLATK-VYFENIGAEDIVDGNPRLILGLIWTIILR 124  eastern emerald elysia
EFX84686       90 LAFLHTK-VRLESIGAEDIVDGNPRLILGLMWTIILR 125  common water flea
XP_030854994   93 LKFLSSKkVRLESIGAEDIADGNTRLILGLIWTVILR 129  purple sea urchin
XP_002732400   89 LTFLATK-VRLESIGAEDICDGNPILILGLIWTIILR 124  Saccoglossus kowalevskii
NP_741632     220 LDFLKKKkIQLENIGAEDILDRNERLILGLIWTIILR 256  Caenorhabditis elegans
XP_013406633   88 LKFLAQKkVQLENIGAEDIVDGNQRLILGLIWTIILR 124  Lingula anatina

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