1BIH


Conserved Protein Domain Family
IgI_3_hemolin-like

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cd20977: IgI_3_hemolin-like 
Third immunoglobulin (Ig)-like domain of hemolin, and similar domains; a member of the I-set of IgSF domains
The members here are composed of the third immunoglobulin (Ig)-like domain of hemolin and similar proteins. Hemolin, an insect immunoglobulin superfamily (IgSF) member containing four Ig-like domains, is a lipopolysaccharide-binding immune protein induced during bacterial infection. Hemolin shares significant sequence similarity with the first four Ig-like domains of the transmembrane cell adhesion molecules (CAMs) of the L1 family. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. The third Ig-like domain of hemolin is a member of the I-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C' in the other. Like the V-set Ig domains, members of the I-set have a discontinuous A strand but lack a C" strand. I-set domains are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM).
Statistics
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PSSM-Id: 409569
Aligned: 3 rows
Threshold Bit Score: 155.627
Created: 17-Sep-2019
Updated: 17-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ####                                                                            
1BIH_A    213 PVPQyvskDMMAKAGDVTMIYCMYGsnp----mgYPNYFKNGKDVNGNPEDRITRhnrtsgKRLLFKTTLPEDEGVYTCE 288 cecropia moth
CAC83729  114 PCPVpa-eNRTVSQGMSEVVFCRQQdvlgldptaHIRWFKDCSPVDKHGETIIEEdg---pKRLRLVNATESHAGVYTCL 189 Atlantic salmon
BAE07175  231 PVPQyvskDMMAKAGDVTMIYCMYGsnp----laHPNYFKNGKDVNGNPEDRITRhnrtsgKRLLFKTTLPEDEGEYTCE 306 Samia ricini
Feature 1                         
1BIH_A    289 VDngv---gkPQKHSLKLTV 305 cecropia moth
CAC83729  190 VEfslqggnyTATHSTQLKV 209 Atlantic salmon
BAE07175  307 VDngv---gkPQKHSLKLTV 323 Samia ricini

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