3DMK,2V5S,4X8X


Conserved Protein Domain Family
IgC2_3_Dscam

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cd20957: IgC2_3_Dscam 
Third immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the Constant 2 (C2)-set of IgSF domains
The members here are composed of the third immunoglobulin domain of the Drosophila melanogaster Down syndrome cell adhesion molecule (DSCAM) protein and similar proteins. Down syndrome cell adhesion molecule (DSCAM) is a cell adhesion molecule that plays critical roles in neural development, including axon guidance and branching, axon target recognition, self-avoidance and synaptic formation. DSCAM belongs to the immunoglobulin superfamily and contributes to defects in the central nervous system in Down syndrome patients. Vertebrate DSCAMs differ from Drosophila Dscam1 in that they lack the extensive alternative splicing that occurs in the insect gene. Drosophila melanogaster Dscam has 38,016 isoforms generated by the alternative splicing of four variable exon clusters, which allows every neuron in the fly to display a distinctive set of Dscam proteins on its cell surface. Drosophila Dscam1 is a cell-surface protein that plays important roles in neural development and axon tiling of neurons. It is shown that thousands of isoforms bind themselves through specific homophilic (self-binding) interactions, a process which mediates cellular self-recognition. Drosophila Dscam2 is also alternatively spliced and plays a key role in the development of two visual system neurons, monopolar cells L1 and L2. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. This group belongs to the C2-set of IgSF domains, having A, B, and E strands in one beta-sheet and A', G, F, C, and C' in the other. Unlike other Ig domain sets, the C2-set lacks the D strand.
Statistics
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PSSM-Id: 409549
Aligned: 7 rows
Threshold Bit Score: 138.048
Created: 19-Sep-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       ######                                                                         
3DMK_A     343 PLSAKIDPPTQTVDFGRPAVFTCQYTGn----PIKTVSWMKDGKAIGHSE--------SVLRIESVKKEDKGMYQCFVRN 410  fruit fly
2V5S_A     313 PLSAKIDPPTQTVDFGRPAVFTCQYTGn----PIKTVSWMKDGKAIGHSE--------SVLRIESVKKEDKGMYQCFVRN 380  fruit fly
4X8X_A     312 PLSAKIDPPTQTVDFGRPAVFTCQYTGn----PIKTVSWMKDGKAIGHSE--------PVLRIESVKKEDKGMYQCFVRN 379  fruit fly
XP_308666  191 PLTAHLQPQVQTVDVGKDAQFQCIISGf----PAHEVLWMHNGKPIVRDSrieiytdvPRIVIKNVQKEDQGMYQCFVAN 266  Anopheles gambia...
Q9VS29     330 PIQVEISPNVLSVHMGGTAEFRCLVTSngspvGMQNILWYKDGRQLPSSGrv-----eDTLVVPRVSRENRGMYQCVVRR 404  fruit fly
QBA31154   333 PLSATLYPADQIVDAGRVATFNCSVQGs----PINEITWYHNGEPLTNSSrkhi-ivdNRLQLPAVNRNDQGMYQCIVGN 407  Octopus vulgaris
GBM04860    95 PLKVTVIPEHQTLNIGETAVLNCSVSGh----PVHTVTWRKDQRHLAANSrvql-lsrDVLHITSVRREDKGMYQCFAYN 169  Araneus ventricosus
Feature 1                    
3DMK_A     411 d-RESAEASAELKL 423  fruit fly
2V5S_A     381 d-RESAEASAELKL 393  fruit fly
4X8X_A     380 d-QESAEASAELKL 392  fruit fly
XP_308666  267 e-WEQIQSTAELQL 279  Anopheles gambiae str. PEST
Q9VS29     405 peGDTFQATAELQL 418  fruit fly
QBA31154   408 d-VDMSQATGELRL 420  Octopus vulgaris
GBM04860   170 d-ADGAQGTAEIKI 182  Araneus ventricosus

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