6HIU


Conserved Protein Domain Family
cyt_P460_Mc-like

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cd20753: cyt_P460_Mc-like 
cytochrome P460 from Methylococcus capsulatus (Bath) and similar proteins
Cytochrome (cyt) P460 is a small soluble periplasmic protein that binds the c-type heme cofactor, heme P460, named for its characteristic ferrous Soret peak maximum at 460 nm, which has the distinction of being the only known heme in biology to withdraw electrons from an iron coordinated substrate. M. capsulatus (Bath) cytochrome P460, encoded by the cytL gene, catalyzes the oxidation of hydroxylamine (NH2OH) to form nitrous oxide (N2O) under anaerobic conditions. Similar to Nitrosomonas europaea cyt P460, it is defined by an unusual porphyrin (heme)-lysine cross link. This subfamily belongs to a family, called the cytochrome P460 family, of small mono-heme c-type cytochromes that are predominantly of beta-sheet structure, as opposed to the four elongate, tightly-packed alpha-helices of the widely distributed cytochromes c' of photoheterotrophic and denitrifying bacteria.
Statistics
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PSSM-Id: 410960
Aligned: 210 rows
Threshold Bit Score: 146.854
Created: 19-Sep-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heme bindinghomodimer
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:6HIU: Methylococcus capsulatus str. Bath cytochrome P460 binds heme C; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         # #      #                            # #                      
6HIU_B        24 NGISLPAGYKDWKMIGVSSRIEqnnLRAILGNDIAVKAARegr---thPWPDGAILVKLSWKksthelfpSAEVPGDFTQ 100 Methylococcus c...
PKN17429      24 ISFSEIRGYETWQVIAPSYRTDnheVRIILGNPVMINAYQegipgngkLFPDGSTIVKIGWSdrknpdfpAALEPDVLKR 103 Deltaproteobact...
WP_121008819  27 LKFGLIKGYENWHVVATHFRTDkneLRYIIGNDVAVKAYRsgvplngkEFPEGAILVKIGYSlkknpafeASLEPDVIQR 106 Hydrogenivirga ...
OPY92505      80 ISFSEIRGYETWDVIAPSYRTDnkeLRIILGNSAMIDSYKsgvpgngkAFSDGSIVVKIGWAerqspsfpVAYEPGELRR 159 Syntrophaceae b...
WP_075165636  46 IHFGLIKGYEHWEVVAMHYRPDmkeMRYILGNPLAVQAYRqgipqnghNFPTGAILVKIGYSlkpirsfpNAIEPNVLQR 125 Chthonomonas ca...
OYZ60026      33 LSFREIEGYQDYKIVATHYRTDkkeLRYILANPIALKALMak----kqPLPEGSKIVKVAWSikpmatfpDALEADQIQR 108 Sulfuricurvum s...
WP_068210528  40 LKFKEIEDYKNYKIVATHFRTDkneLRYVLVNEIAFKPFTnn-----eILPEGSKIVKIGWKvkkmsnfgVALESDSLQR 114 Lutibacter prof...
RUM45162      38 LSFKGIEGYQNYKVIATHFRVDkneLRYILVNSIAYQALKng----qkPLPDGSKVVKIGWSvkkmsmwpDALEADKIQR 113 Hydrogenimonas sp.
PKL38386      36 LELNRANGYDSWELVAAHMRVDrdeMHVIWGNDTAARSYKkagt-qkpFFENGSILVKLGYTlgqnpdfqSSIEPVQIMR 114 Spirochaetae ba...
RLD98527      34 LSFSYIRDYKNWPLISLNYRRDleeLHMILGNRTALENYIhgtpqngkSFTDGTVLVRLIFAarpnpsfpQSLEPVGLQR 113 Aquificae bacte...
Feature 1         ###               ###                     ##  ##       ####    
6HIU_B       101 ADFMVKDaAKYASt-GGWGYARWLgmeqk----pygaNADFAQECMGCHSGakaaDYVFTHPAK 159 Methylococcus capsulatus str. Bath
PKN17429     104 VEFIIKDsQRFRDs-DGWGYARFVydaktstfapfgkDASFVQDCHQCHTAvkqkDFIFTGYPR 166 Deltaproteobacteria bacterium H...
WP_121008819 107 VEYMIKDsKRFKDs-GGWGFARFVydakdgkykvfgkSAEDYVQCFTCHKLvekkDFVFTDYVN 169 Hydrogenivirga caldilitoris
OPY92505     160 VEFIVKDsKRFPQt-GGWAYARFVydaktatftpwgkDASFAQECFRCHNVvkdrDYIFTGYPQ 222 Syntrophaceae bacterium PtaU1.B...
WP_075165636 126 VEFMVRDpKFKST--GGWGFARFVyhpatktytpygqNASFAQECFNCHAIvknrDFVFTSYVP 187 Chthonomonas calidirosea
OYZ60026     109 IEYMVKDsKRYNQngDHWGYARYVkkgd-----nyvpYAKGSAECVACHASvasdDYLFTSFQK 167 Sulfuricurvum sp. 24-42-5
WP_068210528 115 IEYMIKDsKRFKDnpGNWGYARFVkenn-----kyksWGKGTVSCIACHNLskgnNFVFTKYQK 173 Lutibacter profundi
RUM45162     114 IEYMVKDsQTFNHqgDHWGYARFIkten-----gykaWDKGVQSCISCHSSvqenDYLFTNPQK 172 Hydrogenimonas sp.
PKL38386     115 IEYMIKDdKKFKKt-GGWGYARFPynqagntfsvygaDADFARECFNCHMRvkerDFVFTRHLS 177 Spirochaetae bacterium HGW-Spir...
RLD98527     114 LDYMLKDvERFKEt-EGWGYANFIydaknqsfkpygkDASFAQECCNCHRLaksrDYVFTSYTP 176 Aquificae bacterium

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