Conserved Protein Domain Family
LGIC_ECD_nAChR_E

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cd19030: LGIC_ECD_nAChR_E 
extracellular domain of nicotinic acetylcholine receptor subunit epsilon (CHRNE)
This subfamily contains the extracellular domain of nicotinic acetylcholine receptor subunit epsilon (epsilon), encoded by the CHRNE gene and found in adult skeletal muscle. Epsilon subunit forms a heteropentamer with (alpha1)2, beta and delta after birth, replacing the gamma subunit seen in embryonic receptors. The adult-type epsilon-AChR has a higher conductance and a shorter open time compared to embryonic gamma-AChR and the open channel is non-selectively cation permeable. Mutations of the CHRNE gene are the most common causes of congenital myasthenic syndrome (CMS), most of which are autosomal recessive loss-of-function mutations, resulting in endplate AChR deficiency. A highly fatal fast-channel syndrome is caused by AChR epsilon subunit mutation (Trp to Arg; changing environment from anionic to cationic) at the agonist binding site at the alpha/epsilon interface of the receptor, thus disrupting agonist binding affinity and gating efficiency.
Statistics
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PSSM-Id: 349831
Aligned: 8 rows
Threshold Bit Score: 420.573
Created: 3-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
pentamerCys-loop
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of nicotinic acetylcholine receptor subunits

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # #     ##      #                     # #        ## # ##   # ##   ### 
Q04844        49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNYskddfgGIETLRVPSElVWLPEIVLENNIDGQFGVAYDANV 128 human
XP_536608     49 VTITLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNYskddfgGVETLRVPSElVWLPEIVLENNIDGQFGVAYDANV 128 dog
NP_033733     49 VTITLKVTLTNLISLNEKEETLTTSVWIGIDWHDYRLNYskddfaGVGILRVPSEhVWLPEIVLENNIDGQFGVAYDSNV 128 house mouse
NP_000071     49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNYskddfgGIETLRVPSElVWLPEIVLENNIDGQFGVAYDANV 128 Homo sapiens
XP_523556     49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNYskddfgGIETLRVPSElVWLPEIVLENNIDGQFGVAYDANV 128 Pan troglodytes
XP_001097094  49 VTISLKVTLTNLISLNEKEETLTTNVWIGIDWQDYRLNYskddfgGIEILRVPSElVWLPEIVLENNIDGQFGVAYDVNV 128 Macaca mulatta
NP_776697     49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNYskgdfgGVETLRVPSElVWLPEIVLENNIDGQFGVAYEANV 128 Bos taurus
NP_058890     49 VTITLKVTLTNLISLNEKEETLTTSVWIGIEWQDYRLNFskddfaGVEILRVPSEhVWLPEIVLENNIDGQFGVAYDCNV 128 Rattus norvegicus
Feature 1        #         # # #   #                     #                                       
Q04844       129 LVYEGGSVTWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYNaEEVEFTFAVDNDGKtinkiDIDTEAYTENGEWAID 208 human
XP_536608    129 LIYEGGYVSWLPPAIYRSTCAVEVTYFPFDWQNCSLVFRSQTYNaEEVDFVFAVDDDGEtiskiDIDTEAYTENGEWAID 208 dog
NP_033733    129 LVYEGGYVSWLPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNaEEVEFIFAVDDDGNtinkiDIDTAAFTENGEWAID 208 house mouse
NP_000071    129 LVYEGGSVTWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYNaEEVEFTFAVDNDGKtinkiDIDTEAYTENGEWAID 208 Homo sapiens
XP_523556    129 LVYEGGSVRWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYNaEEVEFTFAVDDDGKtinkiDIDTEAYTENGEWAID 208 Pan troglodytes
XP_001097094 129 LVYEDGSVTWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYNaEEVEFTFAVDDSGEtinkiDIDTEAYTENGEWAID 208 Macaca mulatta
NP_776697    129 LVSEGGYLSWLPPAIYRSTCAVEVTYFPFDWQNCSLVFRSQTYNaEEVEFVFAVDDEGKtiskiDIDTEAYTENGEWAID 208 Bos taurus
NP_058890    129 LVYEGGSVSWLPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNaEEVELIFAVDDDGNainkiDIDTAAFTENGEWAID 208 Rattus norvegicus
Feature 1                                      #
Q04844       209 FCPGVIRRHhggatdgPGETDVIYSLIIRRK 239 human
XP_536608    209 FCPGLIRRPngasagdPGVVDIIYTLIIRRK 239 dog
NP_033733    209 YCPGMIRRYeggstegPGETDVIYTLIIRRK 239 house mouse
NP_000071    209 FCPGVIRRHhggatdgPGETDVIYSLIIRRK 239 Homo sapiens
XP_523556    209 FCPGVIRRHhggatdgPGETDVIYSLIIRRK 239 Pan troglodytes
XP_001097094 209 YCPGVIRRHdsgatdgPGETDVVYSLIIRRK 239 Macaca mulatta
NP_776697    209 FCPGVIRRHdgdsaggPGETDVIYSLIIRRK 239 Bos taurus
NP_058890    209 YCPGMIRHYeggstedPGETDVIYTLIIRRK 239 Rattus norvegicus

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