5FJV,2BG9,2BG9,2BG9,4AQ5,4D01,5KXI,5KXI


Conserved Protein Domain Family
LGIC_ECD_nAChR

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cd18997: LGIC_ECD_nAChR 
Click on image for an interactive view with Cn3D
extracellular domain of nicotinic acetylcholine receptor
This family contains the extracellular domain of nicotinic acetylcholine receptor (nAChR), a member of the pentameric "Cys-loop" superfamily of transmitter-gated ion channels. nAChR is found in high concentrations at the nerve-muscle synapse, where it mediates fast chemical transmission of electrical signals in response to the endogenous neurotransmitter acetylcholine (ACh) released from the nerve terminal into the synaptic cleft. Thus far, seventeen nAChR subunits have been identified, including ten alpha subunits, four beta subunits, and one gamma, delta, and epsilon subunit each, all found on the cell membrane that non-selectively conducts cations (Na+, K+, Ca++). These nAChR subunits combine in several different ways to form functional nAChR subtypes which are broadly categorized as either muscle subtype located at the neuromuscular junction or neuronal subtype that are found on neurons and on other cell types throughout the body. The muscle type of nAChRs are formed by the alpha1, beta1, gamma, delta, and epsilon subunits while the neuronal type are composed of nine alpha subunits and three beta subunits, which combine in various permutations and combinations to form functional receptors. Among various subtypes of neuronal nAChRs, the homomeric alpha7 and the heteromeric alpha4beta2 receptors are the main subtypes widely distributed in the brain and implicated in the pathophysiology of neurodevelopmental disorders such as schizophrenia and autism and neurodegenerative disorders such as Alzheimer's disease and Parkinson's disease. Among subtypes of muscle nAChRs, the heteromeric subunits (alpha1)2, beta, gamma, and delta in fetal muscle, and the gamma subunit replaced by epsilon in adult muscle have been implicated in congenital myasthenic syndromes and multiple pterygium syndromes due to various mutations. This family also includes alpha- and beta-like nAChRs found in protostomia.
Statistics
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PSSM-Id: 349798
Aligned: 177 rows
Threshold Bit Score: 179.994
Created: 2-Nov-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
pentamerCys-loop
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Structure:5KXI: Homo sapiens alpha4beta2 nicotinic receptor ligand binding domain interacts with adjacent subunits and forms a pentamer; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #     ##      #                     # #        ## # ##       # ##   
5FJV_A     26 VIVRFGLSIaQLIDVDEkNQMMTTnVWLKQEWSDYKLRWnptdfgNITSLRVPSemIWIPDIVLYNna----dGEFAvt- 100 human
5KXI_A     36 VLVRFGLSIaQLIDVDEkNQMMTTnVWVKQEWHDYKLRWdpadyeNVTSIRIPSelIWRPDIVLYNna----dGDFAvt- 110 human
EDO42054   63 VNVEFSLSLiQIIAVNSkSQLVTVsVWIRQKWTNPMLAWntskygGIESVNLNPakVWIPDIILYNnadetyaGGLEk-- 140 starlet sea anemone
EDO44896   38 YMVTFGLELvQLVNVDDkNQIITTnVWVRQRWTNLLLKWdpdkygGITRVRIDAskIWIPDIVLYNsa----dSEFSggl 113 starlet sea anemone
EDO45107   55 LVVTFGMTLdKLMAVDSrNQVITVnAWILQTWTHPVLKWspr-rrNVTKTRFSIeeVWVPDTALFNngekavaGRQKff- 132 starlet sea anemone
EDO47639   36 LALNFSLKFvQIMDVKDkEQLVSVeCWYSMNWINSFLKWdkkkyqNESRVFFDPseIWVPDIALYNng----dDKVQtsg 111 starlet sea anemone
KXJ13445   77 VEVKFGIAYtQIVDLIEkDQVLESnIWVRMSWKNHLLRWnataygGIKAINITPlkMWLPDIVLHNna----eENLPsgt 152 Exaiptasia pallida
KXJ13859  177 LQVFFQLKLvQIVDISEkEESLRVnVWTTQQWKDPFLMWdpkkydGIDTINVEPsnIWLPIVILYNna----aSSFSggm 252 Exaiptasia pallida
KXJ16675   53 VNVSFALSLsKLVELNTkHQLLVIdSWIIQRWTNPYLAWnesehkGIHTLHVPAtsMWVPDTVLYDng----dDEVSqag 128 Exaiptasia pallida
KXJ26556   70 VSVEFGLELvQLVNVNDrHQMITTnVWVRQKWENQLLTWdpdkynGIRQVRLDAskVWIPDIVLYNsa----gSEFSggt 145 Exaiptasia pallida
Feature 1          ### #         # # #   #                     #                              
5FJV_A    101 ----hMTKAHLFSTGTVHWVPPaIYKSSCSIDVtfFPFDQQNCKMKFGSWTYdkaKIDLEQmeq---tvDLKDYWes--g 171 human
5KXI_A    111 ----hLTKAHLFHDGRVQWTPPaIYKSSCSIDVtfFPFDQQNCTMKFGSWTYdkaKIDLVNmhs---rvDQLDFWes--g 181 human
EDO42054  141 ----yKTSVIASSDGTQEWNSPaSFTSTCNINVryFPFDSQNCSLKFGSWTYvgnRLTMTStsd---saDLSKYVnn--g 211 starlet sea anemone
EDO44896  114 --ekyKTRVILNHDGVNAWYSPaSFRSTCQIDVtfFPFDQQTCFMKFGSWTFe--VVDLDIfad---ksPLHSSQymksa 186 starlet sea anemone
EDO45107  133 ----eSSDVIMTYDGKAKWRTYaTLTNKCKLNAkfWPMDEHVCTLTFSSRRYtasEMKIQSdtt---neHATTDHls-ns 204 starlet sea anemone
EDO47639  112 grtkfLTNIVVEDTGKCVWSGPvTFTFTCSMALsrWPFDDQNCTMKFGSLSYg--KNNFIIskv--kvsKSDDFIen--s 185 starlet sea anemone
KXJ13445  153 l-yqfKTKVMLTSDGKCTWYAPtILRSGCNIDItyFPFDDQLCELKFGSWTFngfQVNIVQmre---daDLGFYMes--s 226 Exaiptasia pallida
KXJ13859  253 --ekyKTKVVIDNTGTVKWYAAtQFLASCKLNIryFPFDEQYCYMTFGSWTFstkHMDMKTsqv---qaDMSSYMqn--g 325 Exaiptasia pallida
KXJ16675  129 ftekfKTFVMLESNGLCSWMAPsTFKSSCDIDVtnFPFDTQSCSMTFGSWTYd--DRLLSIkqlhgkhsQAERYVan--g 204 Exaiptasia pallida
KXJ26556  146 --ekyKTPVIVNFDGTNNWFSPaSFTSTCKIDVtfFPFDSQTCSMKFGSWTYeinDLDMTPen----asMTSMYTes--a 217 Exaiptasia pallida
Feature 1                                        #
5FJV_A    172 EWAIVNATGTYNSkkydc-caeiYPDVTYAFVIRRL 206 human
5KXI_A    182 EWVIVDAVGTYNTrkyec-caeiYPDITYAFVIRRL 216 human
EDO42054  212 EWHLLAMPAKLNRvfync-ckypFYDVTLYLEIQRK 246 starlet sea anemone
EDO44896  187 EWDLIAASKKRNVeyyac-ctypFSDVTVTWVFRRK 221 starlet sea anemone
EDO45107  205 EWDVIKITVKTGNvd-------dFSAISYSIHIRRK 233 starlet sea anemone
EDO47639  186 NWELKNITVALQEtdhgdcclfgFSQVTYTLNMARK 221 starlet sea anemone
KXJ13445  227 EFKLISAKAKRNVvkysc-cpepYPDITFYIHLRRD 261 Exaiptasia pallida
KXJ13859  326 EWEIVNVPVKENKvqypc-cedtYSDITYTIHIKRK 360 Exaiptasia pallida
KXJ16675  205 DWKVLDVDISNPRknytc-ctypFSSVVYTFSLERK 239 Exaiptasia pallida
KXJ26556  218 EWDLKIAFKRRQAkkypc-ctneLVDITAFITIKRK 252 Exaiptasia pallida

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