Conserved Protein Domain Family
LGIC_ECD_nAChR_B3

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cd19026: LGIC_ECD_nAChR_B3 
extracellular domain of nicotinic acetylcholine receptor subunit beta 3 (CHRNB3)
This subfamily contains the extracellular domain of nicotinic acetylcholine receptor subunit beta 3 (beta3), encoded by the CHRNB3 gene. CHRNB3 polymorphisms have been reported to potentially affect nicotine-induced upregulation of nicotinic and to be associated with disorders such as schizophrenia, autism, and cancer. Beta3 subunit is depleted in the striatum of Parkinson's disease patients. Rare variants in CHRNB3 are also implicated in risk for alcohol and cocaine dependence and independently associated with bipolar disorder. Human alpha6beta2beta3* (* indicating possible additional assembly partners) nAChRs on dopaminergic neurons are important targets for drugs to treat nicotine addiction and Parkinson's disease; (alpha6beta2)(alpha4beta2)beta3 nAChR is essential for addiction to nicotine and a target for drug development for smoking cessation.
Statistics
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PSSM-Id: 349827
Aligned: 5 rows
Threshold Bit Score: 394.337
Created: 2-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
pentamerCys-loop
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of nicotinic acetylcholine receptor subunit beta

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # #     ##      #                     # #        ## # ##   # ##   ### 
P43679        51 IKVLFGLKISQLVDVDEKNQLMTTNVWLKQEWMDHKLSWNPeeYGGITAIRVPSESLWLPDIVLFENADGRFEGSLMTKA 130 chicken
NP_000740     54 IKVYFGLKISQLVDVDEKNQLMTTNVWLKQEWTDHKLRWNPddYGGIHSIKVPSESLWLPDIVLFENADGRFEGSLMTKV 133 human
XP_002942943  56 IKVNFGLKISQLVDVDEKKQLMTTNVWLRQEWMDMKLRWNPkdYGGITYIRVPSESLWLPDIVLFENADGRFEGSLMTKA 135 tropical clawed...
P13908        56 VKVRFGLKISQLVDVDEKNQLMTTNVWLWQEWLDYKLRWNPenYGGITSIRVPSESIWLPDIVLYENADGRFEGSLMTKA 135 goldfish
NP_990143     51 IKVLFGLKISQLVDVDEKNQLMTTNVWLKQEWMDHKLSWNPeeYGGITAIRVPSESLWLPDIVLFENADGRFEGSLMTKA 130 chicken
Feature 1        #         # # #   #                     #                                       
P43679       131 IVKYNGVVQWMPPASYKSSCTMELTFFPFDRQNCSMKFGSWTYDGsMVDLILVDENVDTKDFFDNGEWEILNAKGMKGNR 210 chicken
NP_000740    134 IVKSNGTVVWTPPASYKSSCTMDVTFFPFDRQNCSMKFGSWTYDGtMVDLILINENVDRKDFFDNGEWEILNAKGMKGNR 213 human
XP_002942943 136 IIKYDGTVTWTPPASYKSSCTMDVTFFPFDRQNCSMKFGSWTYDGnMVDLILLDENVDRKDFFDNGEWDILNATGLKGMR 215 tropical clawed...
P13908       136 IVRYNGMITWTPPASYKSACTMDVTFFPFDRQNCSMKFGSWTYDGnMVKLVLINQQVDRSDFFDNGEWEILSATGVKGSR 215 goldfish
NP_990143    131 IVKYNGVVTWMPPASYKSSCTMDVTFFPFDRQNCSMKFGSWTYDGsMVDLILVDENVDRKDFFDNGEWEILNAKGMKGNR 210 chicken
Feature 1                          #
P43679       211 KDglYSYPFVTYSFVLRRL 229 chicken
NP_000740    214 RDgvYSYPFITYSFVLRRL 232 human
XP_002942943 216 KDglYSYPFITYSFVLRRL 234 tropical clawed frog
P13908       216 QDshLSYPYITYSFILKRL 234 goldfish
NP_990143    211 KDglYSYPFVTYSFVLRRL 229 chicken

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