Conserved Protein Domain Family
LGIC_ECD_GABAR_RDL-like

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cd19008: LGIC_ECD_GABAR_RDL-like 
gamma-aminobutyric acid receptor subunit beta-like extracellular domain in protostomia, such as RDL (resistant to dieldrin)
This family contains extracellular domain of beta-like subunits of type-A gamma-aminobutyric acid receptor (GABAAR) found in protostomia, similar to Drosophila melanogaster resistant to dieldrin (RDL) subunits. Drosophila melanogaster expresses three GABA-receptor subunit orthologs: (RDL, resistant to dieldrin; GRD, GABA/glycine-like receptor of Drosophila; LCCH3, ligand-gated chloride channel homolog 3), and may possibly form homo- and/or heteropentameric associations. GABAARs are known to be the molecular targets of a class of insecticides. The resulting pentameric receptors in this family have been shown to be activated by insect GABA-receptor agonists muscimol and CACA, and blocked by antagonists fipronil, dieldrin, and picrotoxin, but not bicuculline. GABAARs are abundant in the CNS, where their physiological role is to mediate fast inhibitory neurotransmission. In insects, this inhibitory transmission plays a crucial role in olfactory information processing. Bombyx mori includes three RDL (RD1, RD2, RD3), one LCCH3, and one GRD subunits. Its RDL1 gene has RNA-editing sites, and the RDL1 and RDL3 genes possess alternative splicing, enhancing the diversity of its GABA-receptor gene family. The three RDL subunits may have arisen from two duplication events.
Statistics
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PSSM-Id: 349809
Aligned: 10 rows
Threshold Bit Score: 326.326
Created: 1-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:pentamer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         # ##    ##      # ##                       # ##        ######   # # ##
Q9BLY8               83 VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLayrk-----rpgVETLSVGSEFIKNIWVPDTFFVNE-KQSYFH 156  Drosoph...
AHE41094             68 VEVGVTMQIISISTVSEVQMDFTSDFYFRQSWRDERLsfqk-----spdLESMTVGAEVAEKIWVPDTFFANE-KSAYFH 141  souther...
BAN92442             64 VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLaykk-----rtgVETLSVGSEFIKNIWVPDTFFVNE-KQSYFH 137  domesti...
ABU63594             61 VEVGVTMYVLSISSVSEVLMDFTLDFYFRQFWTDPRLafrk-----rpgVETLSVGSEFIKNIWVPDTFFVNE-KQSYFH 134  red flo...
Q22637               60 VDVGITIHVSSISAVSEVDMDFTLDFYMRQTWQDPRLafgsldlglskeIDSLTVGVDYLDRLWKPDTFFPNE-KKSFFH 138  Caenorh...
NP_498532            75 IEVNITAHVTTISAVSEVSMDYTLDLYLRQIWKDPRLawe------sdvEDSLTIGIDMVKTIWTPDTFFPNE-KKSFFH 147  Caenorh...
AJE68941             68 VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLafkk-----rtgVETLSVGSEFIKNIWVPDTFFVNE-KQSYFH 141  honey bee
FlyBase:CG10537-PG   83 VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLayrk-----rpgVETLSVGSEFIKNIWVPDTFFVNE-KQSYFH 156 
OWA49774             92 VEVDVTMEITSISSMSEVDMDFTIDIYFRQFWTDPRLiikt----fpnkDEQITVGQEMMDRIWMPDTFFPNEkKSFFHH 167  Hypsibi...
EFX85675             26 VQIQVSMGIITISSLSEVTMDFTLDVYFRQFWTDDRLsfqr-----qrgVEILSVSTEYLRNMWVPDTFFPNE-KTAYLH 99   common ...
Feature 1                    ### #         ###                           #                              
Q9BLY8              157 IATtSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTmrDIRYKWNEGPn---------SVGVS 227  Drosoph...
AHE41094            142 AATtPNTFLRIGSGGEVFRSIRLTVTASCPMDLRYFPMDRQACTIEIESFGYTmkDIRYRWSDGDt---------SVRIA 212  souther...
BAN92442            138 IATtSNEFIRIHYSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTmrDIRYKWNEGPn---------SVGVS 208  domesti...
ABU63594            135 IATtSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTmrDIRYKWNSGVk---------SVGIS 205  red flo...
Q22637              139 LATtHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHCKLEIESCKSLcsPDIFSPNGYSildimyvsheKKSVS 218  Caenorh...
NP_498532           148 EATsHNSFLRIDNHGNVLRSIRLTVTANCPMSLHTFPLDRQECALEVESYGYStkDIIYHWHGTN----------AVTID 217  Caenorh...
AJE68941            142 IATtSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTmrDIRYKWNEGPn---------SVGVS 212  honey bee
FlyBase:CG10537-PG  157 IATtSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTmrDIRYFWRDGLs---------SVGMS 227 
OWA49774            168 STT-INKFLRIRKNGSLYTSVRLTNTLDCELDLSYFPLDYQNCSVEIESYGYAttDIQYFWKRDAgp------fdQVAYK 240  Hypsibi...
EFX85675            100 TVTtSNEFVRIRHDGEITRSMRITITASCPMNLKYFPLDSQLCPIEIESFGFTtnEIWYKWVDSPk---------AVSIF 170  common ...
Feature 1                                                      #
Q9BLY8              228 S-EVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRS 266  Drosophila simulans
AHE41094            213 K-EVELPQFKVLGHVQKAKEVALTTGNYSRLVCEIRFARS 251  southern cattle tick
BAN92442            209 S-EVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRS 247  domestic silkworm
ABU63594            206 N-EVELPQFRVLGHRQRATVINLTTGNYSRLACEIQFVRS 244  red flour beetle
Q22637              219 TeSYELPQFVLQSIKVVNHTQKLSSGEYSRLCWFFLFKRN 258  Caenorhabditis elegans
NP_498532           218 E-NVHLAHFTIGEHKHIERTISLSTGNYSRLTAYFLFKRN 256  Caenorhabditis elegans
AJE68941            213 N-EVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRS 251  honey bee
FlyBase:CG10537-PG  228 S-EVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRS 266 
OWA49774            241 PkKLKLPQFKILSAVPHSRMEGTGTGQYSRLSCELKFSRR 280  Hypsibius dujardini
EFX85675            171 P-EVELPQFQVMGYRKREYSYSLTTGNYSRLACDIQFVRS 209  common water flea

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