1WP9


Conserved Protein Domain Family
SF2_C_FANCM_Hef

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cd18801: SF2_C_FANCM_Hef 
Click on image for an interactive view with Cn3D
C-terminal helicase domain of Fanconi anemia group M family helicases
Fanconi anemia group M (FANCM) protein is a DNA-dependent ATPase component of the Fanconi anemia (FA) core complex. It is required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage. Hef (helicase-associated endonuclease fork-structure) belongs to the XPF/MUS81/FANCM family of endonucleases and is involved in stalled replication fork repair. FANCM and Hef are DEAD-like helicases belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Statistics
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PSSM-Id: 350188
Aligned: 9 rows
Threshold Bit Score: 194.882
Created: 31-Jan-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ATP
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ATP binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of the superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1WP9_A      201 GIRFEWVrvdlpeiykevrkllremlrdalkplaetgllessspdipkkevlragqiineemakgnhdlrglll------ 274  Pyrococcus furi...
Q58900      203 KVKLIPIridlpnefkralklinealkerlkilkdagvinsiadvtktelielnnklfsydeevkyeli----------- 271  Methanocaldococ...
Q8IYD8      283 ERKVEKLivplgeelaaiqktyiqilesfarsliqrnvlmrrdipnltkyqiilardqfrknpspnivgiqqgiiegefa 362  human
Q7SDF3      347 SRDINTItfdpsdemmevrdlfskalkplvtklssqniyygrdpmslttyglmkarndwmagpgrhvnqgtkfsviat-- 424  Neurospora cras...
Q9UT23      265 KKEVDFFpvdlsaeitdirdrfssilepmlqklnkgnyyriqnakditsftvvqakqaflamsgqnfpanqkwdiln--- 341  Schizosaccharom...
Q9HE09      303 HKKIQLIkvtissemnilksdfanlyrpyfnflrqkklipinceclnikaytlfvslrkysfssknvqskekskim---- 378  Schizosaccharom...
P40562      278 KRKKEKIevpllleiediieqlgmavkpvlqqaielgiyeecdpsqinafkamqqsqkiianptipegikwrnffi---- 353  Saccharomyces c...
A0A1D5PRR9  276 ERQVEKIvvplgeelggiqrayihvletfagrliklgvlarrdvpsltkyqiilardqyrknpspqnvgmqpgiiegdfa 355  chicken
I3XHK1      309 DRKLEVIevplgqdaddvskrlfhvirpyavrlknfgvnlnrdiqtlsphevlmardkfrqaplpglphvnhg------- 381  thale cress
Feature 1                                                                                       
1WP9_A      275 -------------------yhamalklhhaielletqglsalrayikklyeeakagstkaskeifsdkrmkkaisllvqa 335  Pyrococcus furi...
Q58900      272 -------------------------kvcsealklmhakellesqgksvflnyinklsmqrtksaksivndekvreavnll 326  Methanocaldococ...
Q8IYD8      363 icisly--hgyellqqmgmrslyfflcgimdgtkgmtrsknelgrnedfmklynhlecmfartrstsangisaiqqgdkn 440  human
Q7SDF3      425 ---------------failqslahsikllnfhgikpfynnlaefrtteeekggkgsklkrqvledenfqkmmdmiegwmk 489  Neurospora cras...
Q9UT23      342 -----------------tfdalatfayplnlllnhgirpfyqklreveeecfvgrsgykkriinhenyrplmddieillr 404  Schizosaccharom...
Q9HE09      379 -----------------scftlliscahitylldchgiiqfyqklvetknkaegkgsgqsfwlftskpfafylehlhnki 441  Schizosaccharom...
P40562      354 ------------------lqllnnvgqmlkrlkiygirtffnyfqnkctefttkynlkkstnkiaaefyyhpilkniknq 415  Saccharomyces c...
A0A1D5PRR9  356 lcislyhgyellqqmgvrslfiylcgimdgskgltrtknelgrnedfmrlyqqltdmfsdtcqtsangnlhksrtvsenk 435  chicken
I3XHK1      382 --------------------dvescfaalitlyhirkllsshgirpayemleeklkegpfarlmsknedirmtkllmqqr 441  thale cress
Feature 1                                                                                       
1WP9_A      336 keigldHPKMDKLKEIIREQLQrkq--------------nsKIIVFTNYRetaKKIVNELVkd---giKAKRFVGQaske 398  Pyrococcus furi...
Q58900      327 mksdveHPKLGKVVDMVKNILEknk--------------deRIIIFAQYRdtvEKIVNLLTqn---giKAIRFIGQanke 389  Methanocaldococ...
Q8IYD8      441 kkfvysHPKLKKLEEVVIEHFKswnaentt----ekkrdetRVMIFSSFRdsvQEIAEMLSqhq-piiRVMTFVGHasgk 515  human
Q7SDF3      490 idgflgHPKLEYLCETLVNHFMdage-----------gsntRAIVFSEYRdsaEEIVRILNkqp--liKATVFVGQadsk 556  Neurospora cras...
Q9UT23      405 dqsfvgHPKLEHLERIVTEYFEkeqt------------kdtRIMIFVEIRssaEEILRFLGkfy-pnvRPAIFIGQsavr 471  Schizosaccharom...
Q9HE09      442 qglslnHPKMNHLLELLKEHFKdtseg----------yqnqRVMIFTEFRntaEYITTTLLair-pmvRASLFIGQansa 510  Schizosaccharom...
P40562      416 cenylsDPKFVGHGKLQCVRDElmdffq-------krgsdsRVIIFTELResaLEIVKFIDsvaddqiRPHIFIGQarak 488  Saccharomyces c...
A0A1D5PRR9  436 kefiysHPKLKKLEEIVIEHFKsrkmgcsdqttsggtcvdtRVMIFSSFRdsvQEIAEMLSrfs-pvvRVMTFVGHstgk 514  chicken
I3XHK1      442 lshgapSPKLSKMLEILVDHFKvkdp------------ktsRVIIFSNFRgsvRDIMNALSnig-dmvKATEFIGQssgk 508  thale cress
Feature 1                                                                                       
1WP9_A      399 n----------------------------------------------------------drglsQREQKLILDEFARgef 420  Pyrococcus furi...
Q58900      390 g-----------------------------------------------------------kgmsQKEQIEAIERFKKeg- 409  Methanocaldococ...
Q8IYD8      516 s----------------------------------------------------------tkgftQKEQLEVVKQFRDggy 537  human
Q7SDF3      557 r----------------------------------------------------------segmkQKQQIETIEKFKNgah 578  Neurospora cras...
Q9UT23      472 k----------------------------------------------------------aagmsQKLQNETVKQFQKgev 493  Schizosaccharom...
Q9HE09      511 y----------------------------------------------------------stgmnQMQQKETIDQFRAgvi 532  Schizosaccharom...
P40562      489 egfdevkytrkhapkgrkkverlhrqeqekfleaertkraandklersarrtgsseeaqisgmnQKMQKEVIHNFKKgey 568  Saccharomyces c...
A0A1D5PRR9  515 s----------------------------------------------------------tkgftQKEQLEVVKRFREggy 536  chicken
I3XHK1      509 t----------------------------------------------------------lkgqsQKIQQAVLEKFRAggf 530  thale cress
Feature 1                                             #  #          
1WP9_A      421 nVLVATsVGEEGLDVpeVDLVVFYEpvpsAIRSIQRRGRTGRhmpgRVIILM 472  Pyrococcus furiosus DSM 3638
Q58900      410 sVLVSTsVSEEGIDIpsVNYIIFYEpvpsEIRFIQRRGRAMRgeggKVYVLI 461  Methanocaldococcus jannaschii DSM 2661
Q8IYD8      538 nTLVSTcVGEEGLDIgeVDLIICFDsqksPIRLVQRMGRTGRkrqgRIVIIL 589  human
Q7SDF3      579 nVLVATsIGEEGLDIgqVDLIVCYDasasPIRMLQRMGRTGRkragNIVLLL 630  Neurospora crassa OR74A
Q9UT23      494 nTLIATsIGEEGLDIgeVDMIICYDasasPIRMLQRMGRTGRkrkgYIYMLL 545  Schizosaccharomyces pombe 972h-
Q9HE09      533 nTLVATsIGEEGLDIgdTDMIICYDasssPIRTIQRMGRTGRkksgKVFVLL 584  Schizosaccharomyces pombe 972h-
P40562      569 nVLVCTsIGEEGLDIgeVDLIICYDttssPIKNIQRMGRTGRkrdgKIVLLF 620  Saccharomyces cerevisiae S288c
A0A1D5PRR9  537 nTLVSTcVGEEGLDIgeVDLIICFDaqksPIRLVQRMGRTGRqrqgRVVVIL 588  chicken
I3XHK1      531 nVIVATsIGEEGLDImeVDLVICFDanvsPLRMIQRMGRTGRknngRVVVLA 582  thale cress

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