1JR3,1JQJ,1XXH


Conserved Protein Domain Family
HLD_clamp_pol_III_delta
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cd18138: HLD_clamp_pol_III_delta 
helical lid domain of DNA polymerase III subunits delta
DNA polymerase III subunit delta is part of the DNA polymerase III holoenzyme. the delta subunit id required for ring opening and binds the beta subunit. It is a member of the clamp-loader clade of the AAA+ superfamily.
Links
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Statistics
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PSSM-Id: 350840
Aligned: 339 rows
Threshold Bit Score: 49.3451
Created: 15-Nov-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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oligomer
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:1JR3; Escherichia coli clamp loader complex, interacts with gamma subunit at 4A
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                                               #   #  ## ### #          #  
1JR3_D       142 PEQAQLPRWVAARAKqlnLELD--DAANQVLCYCYeGNLLALAQALERLSLLWPdgkLTLPRVEQAV 206 Escherichia coli
KPU83437     139 PNQQRFPQWVFQRLKa--LQLEanNDVIEYLCLHFeGNLLGAKQEFEKLALIYPkqkLTLQQVEQTI 203 Psychromonas sp. PRT-SC03
SHN97093     110 PEGRFFANWMRHRLKranLEAP--ADVITLLCRSFeGNLLAAKQEIDKLSLLYPgqtLNLAQLQQSI 174 Moritella viscosa
OCQ42400     140 PEPKFFPRWMSARFArfgLKAL--PDAINFMCHSYeGNLLAASQEIEKLTLLSPpqpISVTYLQETI 204 Aeromonas veronii
WP_024871595 141 PDARYFPRWMKQRCQqqnLRPD--NDAVTFLCHAYeGNLLAAAQELEKLSLLNLpqpLTVSVLQQNI 205 Tolumonas sp. BRL6-1
WP_094039779 140 PDARHLPRWLGQRLHrhgLQAE--PDALHWLAYAFeGNLLALAGEIEKLSLLALpqpLTLAALQQQV 204 Zobellella denitrificans
WP_053422717 141 LDDQQFQRWLQQRASalkLHLT--PDAITLMQHHCaGNLLAAAQELEKLGLSLVsgtIDAELLEQHL 205 Rheinheimera sp. KL1
WP_046554037 141 LDDKQAQQWLQQRARq--LHLQltSDALSLLQHYSaGNLLAARQELEKLALTHPeqsINADILASFL 205 Arsukibacterium sp. MJ3
ALZ76179     142 LDDHQFMRWLKERAQqlgLKLQ--TDALQLLQHHAaGNLLAARQELEKLALTAQgqwLDGAFLQQYL 206 Rheinheimera sp. F8
WP_086963690 139 PEGSHWLRWLQQRIKqhgLQID--NDGVQWLSLAFeGNLLALNGELEKLALQQLpspLSLALLQEQV 203 Oceanisphaera sp. AMac2203

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