Conserved Protein Domain Family
DEXHc_SMARCAD1

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cd17998: DEXHc_SMARCAD1 
DEXH-box helicase domain of SMARCAD1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 (SMARCAD1, also known as ATP-dependent helicase 1 or Hel1) possesses intrinsic ATP-dependent nucleosome-remodeling activity and is required for both DNA repair and heterochromatin organization. SMARCAD1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350756
Aligned: 9 rows
Threshold Bit Score: 311.242
Created: 3-Feb-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Saccharomyces cerevisiae Chd1 with bound gamma-thio-ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 #######                                 #            
Q9H4L7     497 LKPYQKVGLNWLAlvhkhGLNGILADEMGLGKTIQAIAFLAYLYqeg-nnGPHLIVVPASTIDNWLREVNLWCPtLKVLC 575  human
CAZ84485   636 LKDYQVVGVNWLNllyekKLSCILADEMGLGKTCQVIAFLARLLegg-ikGPHLVVVPSSTLENWLREFKRFCPaLVVEP 714  Tuber melanospor...
NP_009383  572 LKDYQQTGINWLNllyqnKMSCILADDMGLGKTCQVISFFAYLKqin-epGPHLVVVPSSTLENWLREFQKFAPaLKIEP 650  Saccharomyces ce...
EGG10515    96 LKAYQLLGLNWLNllyskRISCILADEMGLGKTAQVVTFLSHLKlsg-rpGPHLVIVPASTLDNWTREFKTFSSnLLVRT 174  Melampsora laric...
NP_609320  289 LADYQIIGLNWLTvmhkqEMNGILADEMGLGKTIQVIAFLAYLKenglsqAAHLIVVPSSTLDNWEAEISRWCPeLVVEK 368  fruit fly
O74842     550 LKSYQLVGVNWLHllyqqKLSGILADEMGLGKTCQVVAFFALLLeqg-hhGPHLVVVPSSTLENWLRELARFCPsLRVEP 628  Schizosaccharomy...
CAA88960   394 LHDYQLIGVKWLImmynkDLNAILGDEMGLGKTIQIVAFLSYLKqig-ktGPHLIVVPSSTIENWIGEFHKWCPsIQLLT 472  nematode
B0R061     448 LQAYQLIGLKWLIllhqhKLSGILADEMGLGKTIQAIAFLAHLYekg-ikGPHLITVPSSTLDNWVRELGLWCPsLKVLI 526  zebrafish
Q5FWR0     474 LKPYQKIGLNWLAllhkhKVNMILADEMGLGKTVQAIAFLAHLYvtg-dsGPHLVVVPASTMDNWIREFNQWCPsMNILL 552  western clawed frog
Feature 1                                                           ##                         
Q9H4L7     576 YYGSqeerkqirf-nihsryedyNVIVTTYNCAISssddrslfrrlkLNYAIFDEGHMLKNmgSIRYQHLMTINaNNRLL 654  human
CAZ84485   715 YYGSlkeraemri--slckrkdwNVLVTTYQLATGdridkrflkdqsFNVCVYDEGHLLKNssSNRYDALMRLPaVFRLL 792  Tuber melanospor...
NP_009383  651 YYGSlqereelrd-ilernagkyDVIVTTYNLAAGnkydvsflknrnFNVVVYDEGHMLKNstSERFAKLMKIRaNFRLL 729  Saccharomyces ce...
EGG10515   175 YYGNqveradlry--elkgleelDVILTTYNVASGapddrkfldrmrFDACVYDEGHQLKNseSKKYKDLMRMRvQWRLL 252  Melampsora laric...
NP_609320  369 YHGSqderrrmrgrfakdgftgfDVLLTTYHIVGStpeerkmfrvckLDYVIFDEAHMLKNmtTQRYANLITINaRMRIL 448  fruit fly
O74842     629 YYGSqqeranire-aieeneikyDILVTTYQLATNnkedrsflkhqnFDVCVYDEGHYLKNrmSERYKHLMNLNaNFRLL 707  Schizosaccharomy...
CAA88960   473 YYGSqderkhlrh-rvkkqkdhiDVILTTYNMVTSksddkkffknfsLNYVIYDEGHMLKNcdSERYRGLMKVKgKKKIL 551  nematode
B0R061     527 YYGSvedrkylrq-diltglidfNIIVSTYNLTIGndhdrslfrklkLKYAVFDEGHMLKNmnSLRYRHLMTINaEHRLL 605  zebrafish
Q5FWR0     553 YYGSqeerkhlry-dilnkvvefNVIVTTYNCAISsaedrslfrrlkLNFAVFDEGHMLKNmsAIRYQHLMTLNaRSRLL 631  western clawed frog
Feature 1                                                                               
Q9H4L7     655 LTGTPVQNNLlELMSLLNFVMPHmfssstseirrmfssktksa-----deqsiyekeriahakqiikPFILRR 722  human
CAZ84485   793 LTGTPLQNNLqELASLLAFILPEvfnekredlasifkykakttdn-eesnsallsiqrikrarammtPFVLRR 864  Tuber melanosporum Mel28
NP_009383  730 LTGTPLQNNLkELMSLLEFIMPNlfiskkesfdaifkqrakttdd-nknhnpllaqeaitraktmmkPFILRR 801  Saccharomyces cerevisia...
EGG10515   253 LTGTPLQNNLqELVSLLSFILPTifenakedlrmifkvpvea-------qanllaqtrvtrakkmmsPFVLRR 318  Melampsora larici-popul...
NP_609320  449 LTGTPLQNNLlELISLLCFVMPKffaksiedikslfakkgksdg--dqdevsqfqetqiqrakrimkPFVLRR 519  fruit fly
O74842     708 LTGTPLQNNLkELVSLLAFILPNmfdsdmddldvifkakptada---dieqallskqrisraktmmtPFVLRR 777  Schizosaccharomyces pom...
CAA88960   552 LTGTPLQNNLiELISLMYFVLSKvfnkycedithllqhfkqlgpaldtknkalyqqdrieeakailqPYILRR 624  nematode
B0R061     606 LTGTPLQNNLlELMSLLNFIMPSmfssstsqiskmfstrsse-------eessfhkdriaqarlimkPFILRR 671  zebrafish
Q5FWR0     632 LTGTPVQNNLlELMSLLNFVMPHmfssstseikrlfsskakst-----deqtifekeriahakqimkPFILRR 699  western clawed frog

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