4AQN,4EPF


Conserved Protein Domain Family
pesticin_lyz

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cd16902: pesticin_lyz 
Click on image for an interactive view with Cn3D
lysozyme-like C-terminal domain of pesticin
Pesticin (Pst) is an anti-bacterial toxin produced by Yersinia pestis that acts through uptake by the target related bacteria and the hydrolysis of peptidoglycan in the periplasm. Pst contains an N-terminal translocation domain, an intermediate receptor binding domain, and a phage-lysozyme like C-terminal activity domain. Bacteriocins such as pesticin are produced by gram-negative bacteria to attack related bacterial stains. Pst is transported to the periplasm via FyuA, an outer-membrane receptor of Y. pestis and E. coli, where it hydrolyzes peptidoglycan via the cleavage of N-acetylmuramic acid and C4 of N-acetylglucosamine. Disruption of the peptidoglycan layer renders the bacteria vulnerable to lysis via osmotic pressure. The pesticin C-terminal domain resembles the lysozyme-like family, which includes soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Statistics
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PSSM-Id: 381621
Aligned: 34 rows
Threshold Bit Score: 148.175
Created: 4-Feb-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: catalytic residues [active site], 3 residue positions
Conserved feature residue pattern:E T DClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                                  #     #            
4AQN_A    168 DHDIFSSNGFEGFNp------tSHFPSNpssd----------------------yfnsTGVTFGSGVDLGQRsk------ 213 Yersinia pestis PY...
EGY25219  246 QTTAGTLHKMEGNTl------yAYIPEKegkp-----------------------mdkSSATIGAGIDLGQWsa------ 290 Desulfovibrio sp. A2
EGW50291   30 DLTTGGTANYYGGPnp-----eRYIPMGi-----------------------------SGVTIGTGVNLGQTda------ 69  Desulfovibrio sp. ...
EGW52012   24 IPCKRRNFDGHGNA--------GDCGEPvg---------------------------qSGVTIGAGLDLGQQge------ 62  Desulfovibrio sp. ...
EGW49622   24 GYIPASPGNFIGTQ--------GQNPTRyka------------------------igaSGVTIATGCDLGQTdv------ 65  Desulfovibrio sp. ...
KAJ16565   89 IDFTARHELPPGGRgn-----rATIPTSdpn-------------------------geSGVTIGYGFDVGQHde------ 132 Pseudomonas aerugi...
EEO29604  502 DLNEERRLIAEDRKngtnkaqkMKWPNN------------------------------SGVTVGCGFDLGQLasge---- 547 Oxalobacter formig...
EHL32046  245 KVIFSALSGYEGGQrl-----eAYLPMRkngd----------------------vidnSGITIATGFDIGQHdn------ 291 Legionella drancou...
CDQ10823  163 RVDYDFIKKNEGAMl------dFYVPGAfstnvktgnnlgpkfkrdkngepiqkaiaaSGVTVGQGVDLGQQtv------ 230 Acidithiobacillus ...
YP_011678  24 IFTRDLLRVHEGRRr------kAYIPPVg----------------------------rSSATISTGLDLGQHdvaslham 69  Desulfovibrio vulg...
Feature 1                                                                                     
4AQN_A    214 -------qDLLNDGv---------------------PQYIADRLDGYY----------MLRGKEAYDKV----------- 244 Yersinia pestis PY...
EGY25219  291 -------kALREVGv---------------------DEDVINRLSPLLgk-------nATEAQSAMDKLk---------- 325 Desulfovibrio sp. A2
EGW50291   70 -------eTLNGMGv---------------------SPGIVNQLRPYL----------SRSKAAAVDAL----------- 100 Desulfovibrio sp. ...
EGW52012   63 -------aDLRRMGl---------------------EMELINLFRPYL----------GKKRHGAVAAL----------- 93  Desulfovibrio sp. ...
EGW49622   66 -------aTLRAYGm---------------------PDAIINSLTPYI----------GLKTSRAIVKL----------- 96  Desulfovibrio sp. ...
KAJ16565  133 -------sGIQALNi---------------------AESTRKKIRPAL----------GLKGANTATFQa---------- 164 Pseudomonas aerugi...
EEO29604  548 ----agmaTLRDYGf---------------------PESYVQKFAPYL----------GKKRVEADDFL----------- 581 Oxalobacter formig...
EHL32046  292 -------yEIKNFGf---------------------PRELEEKLLPFV----------KATKKCAKTLLp---------- 323 Legionella drancou...
CDQ10823  231 -------dSLKHYInieaqky--------gkpadvdIGSLMNRINPFI----------GLRKDASVAALney-------- 277 Acidithiobacillus ...
YP_011678  70 gipaaivgRLAPLAgrnarearqilhlhplvlseaeDHAVEEAIVRHFmhttaqaydaAQHTTSTEVPPgvhsptggtpa 149 Desulfovibrio vulg...
Feature 1                                                                                     
4AQN_A    245 -----RTAPLTLS---------DNEAHLLSNIYIDKFs-----------HKIEGLFNdan--------iglRFSDLPLRT 291 Yersinia pestis PY...
EGY25219  326 ----kQKRSVELT---------PEQAHHLNEKMFLHFg-----------EQARQRYNsapgnkdaqgkplrRFEELPKEM 381 Desulfovibrio sp. A2
EGW50291  101 -----HRLPLTIS---------QAVADELDAAMLNHHi-----------TKIADYYDravg-------lpgRFATLPWQA 148 Desulfovibrio sp. ...
EGW52012   94 -----GKSPLTIT---------ESQCDAVNRAVHADYi-----------RRGADLYDryt--------eskSFADCPAQA 140 Desulfovibrio sp. ...
EGW49622   97 -----AQLPLSIS---------PGAAAEIDHCVHRGYl----------dRYVRPAYGkas---------gvNFDDLPKQA 143 Desulfovibrio sp. ...
KAJ16565  165 ----lAQLIPVLT---------DEDGLSLFTAKMIKVt-----------DRMKVKFQ--------------QWSTLPPAV 206 Pseudomonas aerugi...
EEO29604  582 -----KTHKLVLS---------QDEINTVNRLVMTQQa-----------KDCIGRWDeqialirktnprapFFHEMNSTQ 636 Oxalobacter formig...
EHL32046  324 -----LANQLVIS---------VEDANLIDFAAKGAIl-----------KAAIKSWNtrkl------entpQFKDLTPAQ 372 Legionella drancou...
CDQ10823  278 --ykiRGEYPTLT---------TAEADFISSAVKHGYa-----------EDAAALFNrnsk-------pkmNFWSLPATL 328 Acidithiobacillus ...
YP_011678 150 tstvaGIRTPDLRrqhtastgpESDAESALRVGGDAPtalprgngqavaPSTSHHRNeass-------hrrRFSDLPKEL 222 Desulfovibrio vulg...
Feature 1                                                                                  
4AQN_A    292 RTALVSIGYQKGfkl----srTAPTVWNKVIa--------kDWNGLVNAFNNi---------vDGMSDRRKREGALV 347 Yersinia pestis PY-113
EGY25219  382 QAVVTSVLYQHGst------gKFPKFWEHSTk--------gDWEGAIKELRNfsp-----dpdYKYHPRRNKEADLM 439 Desulfovibrio sp. A2
EGW50291  149 QAVIVSIQYQRGvns----prKYPNTWKAFVn--------qDWQDATARLKNgr-------lwSGYQKRRRQEGELL 206 Desulfovibrio sp. 6_1...
EGW52012  141 QAVIVSLFYQLGlpfpsadrhGYPVLYGHLCr--------gDWQAAALELKTg---------fKKYIYRRRQEGELL 200 Desulfovibrio sp. 6_1...
EGW49622  144 QAVIFSCCFQKGcgg---vrrDWPKLWGYLTr--------qDWSKATHELKYg---------fTQYKARRRIEGELL 200 Desulfovibrio sp. 6_1...
KAJ16565  207 KTIVTDLYYHYGey------sSFPNFETAISq--------sDWPAAIRELRNwngtpnstdpsDGIARRLNNRADYL 269 Pseudomonas aeruginos...
EEO29604  637 QTIVFSRHYHQGp-------gWYQKDSNKAVynam---vdnDWPTVKRQLHGlinr----skpEWLKNRFRKEEIFL 699 Oxalobacter formigene...
EHL32046  373 QTILFSRTFHQGpgmp--nkaVSKNFYNAALk--------nNWMEAENHLRNydv------pkGYYKDRVNNEANLL 433 Legionella drancourti...
CDQ10823  329 QTTLTDMKYHAYiqsv--aqhYYRGEWQKAAeefrrlsttaKWAKFEGRFRRr---------aKMLTDAINNNSLPK 394 Acidithiobacillus fer...
YP_011678 223 QAPVVSVLFQHGsp------rAVPRFWALVTr--------gDWRGAIAEMRSfyr------rpTVLQTRRDAEAGIM 279 Desulfovibrio vulgaris

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