3KV5,3KQI,3KV4,1WEP


Conserved Protein Domain Family
PHD_PHF2_like

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cd15554: PHD_PHF2_like 
Click on image for an interactive view with Cn3D
PHD finger found in PHF2, PHF8 and KDM7
This family includes PHF2, PHF8, KDM7, and similar proteins. PHF2, also termed GRC5, or PHD finger protein 2, is a histone lysine demethylase ubiquitously expressed in various tissues. PHF8, also termed PHD finger protein 8, or KDM7B, is a monomethylated histone H4 lysine 20(H4K20me1) demethylase that transcriptionally regulates many cell cycle genes. It also preferentially acts on H3K9me2 and H3K9me1. PHF8 is modulated by CDC20-containing anaphase-promoting complex (APC (cdc20)) and plays an important role in the G2/M transition. It acts as a critical molecular sensor for mediating retinoic acid (RA) treatment response in RAR alpha-fusion-induced leukemia. Moreover, PHF8 is essential for cytoskeleton dynamics and is associated with X-linked mental retardation. KDM7, also termed JmjC domain-containing histone demethylation protein 1D (JHDM1D), or KIAA1718, is a dual histone demethylase that catalyzes demethylation of monomethylated and dimethylated H3K9 (H3K9me2/me1) and H3K27 (H3K27me2/me1), which functions as an eraser of silencing marks on chromatin during brain development. It also plays a tumor-suppressive role by regulating angiogenesis. All family members contain a plant homeodomain (PHD) finger and a JmjC domain.
Statistics
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PSSM-Id: 277029
Aligned: 14 rows
Threshold Bit Score: 90.9053
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitehistone H3
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          # #            #  #    #  #               #  #
3KV5_D         39 YCVCRQPYdvnrFMIECDiCKDWFHGSCVGVeehhavdIDLYHCPNC 85   human
3KQI_A         12 YCVCRLPYdvtrFMIECDaCKDWFHGSCVGVeeeeapdIDIYHCPNC 58   human
3KV4_A          7 YCLCRLPYdvtrFMIECDmCQDWFHGSCVGVeeekaadIDLYHCPNC 53   human
XP_789776       7 YCICKQVYdvtrFMIECDvCQDWFHGSCVEIredqsedVEEFHCPTC 53   purple urchin
1WEP_A         14 YCLCRQPYnvnhFMIECGlCQDWFHGSCVGIeeenavdIDIYHCPDC 60   house mouse
XP_006825994    7 YCICRQVYdvtrFMIECDiCKDWFHGSCVGVsehqskdVEEYHCPLC 53   Saccoglossus kowalevskii
EEC02480        7 YCVCGQPYdpnqFMIQCDvCKDWFHGSCVDVkehdagdIIKYHCPQC 53   black-legged tick
ESO88867        9 YCLCKKPYdetlFMIECDvCKDWFHGSCVGVqehqaadIEIFHCPNC 55   owl limpet
XP_004926980    8 YCLCGQPYnvgqFMIECDcCREWFHGSCVDVkiyqsddIDKYHCPKC 54   domestic silkworm
EEN55664       10 YCICRQPYdvtrFMIECDvCENWFHGSCVGVeehqaadIDKYHCPNC 56   Florida lancelet

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