1FKA,1RSS,1N32,1IBL,1FJG,1X18,4JI7,4K0K,1HR0,3GTY,1HUS


Conserved Protein Domain Family
uS7_Bacteria

?
cd14869: uS7_Bacteria 
Click on image for an interactive view with Cn3D
Bacterial homolog of Ribosomal Protein S7
uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.
Statistics
?
PSSM-Id: 271248
Aligned: 114 rows
Threshold Bit Score: 163.388
Created: 26-Nov-2013
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:rRNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Ribosomal protein S7 directly interacts with rRNA during the assembly of small ribosomal subunit.
  • Structure:1FJG; Thermus thermophilus RPS7 binds 16S ribosomal RNA, contacts at 4A
  • Comment:Ribosomal protein S7 plays a critical role in controlling rRNA folding.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                        ###   #####  ##                                    #    #   #   
1FKA_G        12 LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQek---tgQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVP 88  Thermus thermop...
1FJG_G        12 LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQek---tgQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVP 88  Thermus thermop...
NP_906023     11 ILPDPVYGDVRVTKFVNHLMYDGKKNTAFSIFYGALDIVKtkhsneeKSALEIWKAALDNITPQVEVKSRRIGGATFQVP 90  Porphyromonas g...
P02360        12 ISQDPIYNSTLASKVINKILLNGKKTLAQYIFYETMKNIQei---ykKDPLDILRKAIKNASPQMETRKRRIGGTIYQVP 88  Euglena gracilis
YP_003878173  12 IKPDIKFNNLEISKFINILMLSGKKNKSEKIIYKALYYIKsk----nKNPIKIFLKAIENCKPLVEIKNKKIGGSNYQIP 87  Candidatus Zind...
YP_004191888  12 LPPDPVYQSQIVSKAINMIMWDGKKQLAQKIFYRAMDLVAqk---sgKPPLEVFLDALKNIAPTIELKTRKIGGSNYQVP 88  Mycoplasma haem...
YP_008372662   5 YQPDPRFKDPLVTRFVNHLMKDGKKTIAYRIFYNCISEIEkt----kKNGLKIWKEALDNVRPHVEVRSRRIGGSNIQVP 80  Candidatus Sulc...
P59064        12 SCCDPLFEAPEVGRLVNLVMVSGKKTVAARIVYTALAMLSpd----rRRSYELLMQALHNIKPSAEIRTRRMGGASYRVP 87  Candidatus Trem...
YP_007890478   6 SSSDSLWQNEVIRKLTNRLMYSGKKSVAEKLVFQAMSQIQgr---tsKNALEVTLDAIEMIKPYVEVRSIRVAGATYAVP 82  Andalucia godoyi
YP_003038708  11 RVPDADASCAVVSKLTNCVMMRGEKRVAARLVYKALAHIQav---vgVGALKTLFEAVDNVTPYMEVRSVKVGGVSYQIP 87  Candidatus Hodg...
Feature 1             ##  #   #      #     ##  #                              
1FKA_G        89 MEVSpRRQQSLALRWLVQAANQrperRAAVRIAHELMDAAEGkGGAVKKKEDVERMAEANR 149 Thermus thermophilus
1FJG_G        89 MEVSpRRQQSLALRWLVQAANQrperRAAVRIAHELMDAAEGkGGAVKKKEDVERMAEANR 149 Thermus thermophilus
NP_906023     91 TEIRpERKESISMKNLILYARKrggkTMADKLAAEIVDAFNNqGAAFKRKEDMHRMAEANR 151 Porphyromonas gingivalis W83
P02360        89 VEVKeDRGTSLALKFIIEKARErkgrGISTKLKNEIIDASNNtGEAVKKKEEIHKTAEANK 149 Euglena gracilis
YP_003878173  88 VEVNlNRRISLSMKWIKKFALKrkerFTYIKIANELIDASENkGSSINKKIEIYKMAESNK 148 Candidatus Zinderia insecticola CARI
YP_004191888  89 VEASpERKETLSLRWLVMFSRRrtekTIVEALACEIMDAYNNtGLSIKKRNETIKTAESNK 149 Mycoplasma haemofelis str. Langford 1
YP_008372662  81 TQIPsYVKVTKAMKLLISCARErnekNMYKKLAEEILLASKKeGAAFKKRENIHKMAEANK 141 Candidatus Sulcia muelleri str. Su...
P59064        88 AEICsKRRMSLALRWLKSAAMRrrerYAHVRLYNEILDALSRrGGAVRQRDEVHRLAHANR 148 Candidatus Tremblaya princeps
YP_007890478  83 VEIReERRLSLALRWLVENSRKrkerEMSQKLAGEILDTYLKtSGSLKKKEELHKMAESNR 143 Andalucia godoyi
YP_003038708  88 IDVApKRRLGLAIRWIVAAARRrreaPMWAKLAGELVDSALGrSEACRKREAVRQLVDANQ 148 Candidatus Hodgkinia cicadicola Dsem

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap