1LBC,3DP6,2I3V,3H6T,2XHD,3O29,3KG2,3O28,2XX7,1LBC,1FW0,1MQH,1FTJ,1MQD,1SYH,3PD8,3B7D,3PD9,3RN8,3RNN,1GR2,1LBB,2ANJ,3TDJ,3B6W,1M5D,2GFE,1SYI,1P1N,3B6T,1LB8,2I3W,3R7X,4L17,1P1W


Conserved Protein Domain Family
PBP2_iGluR_AMPA_GluR2

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cd13726: PBP2_iGluR_AMPA_GluR2 
Click on image for an interactive view with Cn3D
The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR2 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily.
This group contains the ligand-binding domain of the AMPA receptor subunit GluR2, a member of non-NMDA (N-methyl-D-aspartate) type iGluRs which are ligand-gated ion channels that mediate excitatory synaptic transmission in the central nervous system. While this ligand-binding domain is structurally homologous to the periplasmic-binding fold type II superfamily, the N-terminal domain of AMPA receptors belongs to the periplasmic-binding fold type I. The AMPA receptors are the most commonly found receptor in the nervous system and sensitive to the artificial glutamate analog, AMPA. They consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current.
Statistics
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PSSM-Id: 270444
Aligned: 46 rows
Threshold Bit Score: 486.839
Created: 23-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1LBC; Rattus norvegicus Glur2 ligand binding core in complexes with glutamate, contacts 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                  #                     
1LBC_A         3 NKTVVVTTILESPYVMMKKNhemlegnERYEGYCVDLAAEIAKHCGFKYKLTIVGdgkYGARDadtKIWNGMVGELVYGK 82  Norway rat
CAA61679     413 NKTIIVTTILESPYVMMKKNhemlegnDRYEGYCVDLATEIAKHCGFKYKLTIVGdgkYGARDadtKIWNGMVGELVYGK 492 chicken
1GR2_A        15 NKTVVVTTILESPYVMMKKNhemlegnERYEGYCVDLAAEIAKHCGFKYKLTIVGdgkYGARDadtKIWNGMVGELVYGK 94  Norway rat
P19491       413 NKTVVVTTILESPYVMMKKNhemlegnERYEGYCVDLAAEIAKHCGFKYKLTIVGdgkYGARDadtKIWNGMVGELVYGK 492 Norway rat
NP_001001775 413 NKTIIVTTILESPYVMMKKNhemlegnDRYEGYCVDLATEIAKHCGFKYKLTIVGdgkYGARDadtKIWNGMVGELVYGK 492 chicken
P42262       413 NKTVVVTTILESPYVMMKKNhemlegnERYEGYCVDLAAEIAKHCGFKYKLTIVGdgkYGARDadtKIWNGMVGELVYGK 492 human
NP_001104484 413 NKTIIVTTILESPYVMMKKNhemlegnDRYEGYCVDLATEIAKHCGFKYKLTIVGdgkYGARDadtKIWNGMVGELVYGK 492 chicken
NP_571970    410 NKTVIVTTILEAPYVMLKKNadlfmdnERYEGYCVDLAAEIAKHCGFKYQLKIVGdgkYGARDaetKIWNGMVGELVYGK 489 zebrafish
AAL13229     410 NKTVIVTTILEAPYVMLKKNadlfmdnERYEGYCVDLAAEIAKHCGFKYQLKIVGdgkYGARDaetKIWNGMVGELVYGK 489 zebrafish
NP_001153152 412 NKTVVVTTILESPYVMFKKNadqfegnDRYEGYCVDLAAEIARHCGFKYKLTIVAdgkYGARDaetKIWNGMVGELVYGK 491 African clawed ...
Feature 1              ###    #                                                                  
1LBC_A        83 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT------------------------------------------- 119 Norway rat
CAA61679     493 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 572 chicken
1GR2_A        95 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPGtd----------------------------------------- 133 Norway rat
P19491       493 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 572 Norway rat
NP_001001775 493 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 572 chicken
P42262       493 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 572 human
NP_001104484 493 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 572 chicken
NP_571970    490 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 569 zebrafish
AAL13229     490 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 569 zebrafish
NP_001153152 492 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 571 African clawed ...
Feature 1                                                                                        
1LBC_A           --------------------------------------------------------------------------------     Norway rat
CAA61679     573 hteefedgretqtnestnefgifnslwfslgafmrqgcdisprslsgrivggvwwfftliiissytanlaafltvermvs 652 chicken
1GR2_A       134 ------------------------------------------------------------------------------gn 135 Norway rat
P19491       573 hteefedgretqssestnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvs 652 Norway rat
NP_001001775 573 hteefedgretqtnestnefgifnslwfslgafmrqgcdisprslsgrivggvwwfftliiissytanlaafltvermvs 652 chicken
P42262       573 hteefedgretqssestnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvs 652 human
NP_001104484 573 hteefedgretqtnestnefgifnslwfslgafmrqgcdisprslsgrivggvwwfftliiissytanlaafltvermvs 652 chicken
NP_571970    570 hteeyedgqiqtnestne-fgifnslwfslgafmrqgcdisprslsgrivggvwwfftliiissytanlaafltvermvs 648 zebrafish
AAL13229     570 hteeyedgqiqtnestne-fgifnslwfslgafmrqgcdisprslpgrivggvwwfftliiissytanlaafltvermvs 648 zebrafish
NP_001153152 572 hteefedgretqsndssnefgifnslwfslgafmrqgcdisprslsgrivggvwwfftliiissytanlaafltvermvs 651 African clawed ...
Feature 1                          #  ###                                                ##  #   
1LBC_A       120 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMRsaePSVFVRTTAEGVARVRKSkgkYAYLLESTMNEY 199 Norway rat
CAA61679     653 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMKsaePSVFVRTTAEGVARVRKSkgkYAYLLESTMNEY 732 chicken
1GR2_A       136 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMRsaePSVFVRTTAEGVARVRKSkgkYAYLLESTMNEY 215 Norway rat
P19491       653 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMRsaePSVFVRTTAEGVARVRKSkgkYAYLLESTMNEY 732 Norway rat
NP_001001775 653 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMKsaePSVFVRTTAEGVARVRKSkgkYAYLLESTMNEY 732 chicken
P42262       653 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMRsaePSVFVRTTAEGVARVRKSkgkYAYLLESTMNEY 732 human
NP_001104484 653 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMKsaePSVFVRTTAEGVARVRKSkgkYAYLLESTMNEY 732 chicken
NP_571970    649 PIESAEDLAKqteIAYGTLDSGSTKEFFRrskIALFDKMWTYMKsaePSVFVKTTAEGVMRVRKSkgkYAYLLESTMNEY 728 zebrafish
AAL13229     649 PIESAEDLAKqteIAYGTLDSGSTKEFFRrskIALFDKMWTYMKgaePSVFVKTTAEGVMRVRKSkgkYAYLLESTMNEY 728 zebrafish
NP_001153152 652 PIESAEDLSKqteIAYGTLDSGSTKEFFRrskIAVFDKMWTYMKsaePSVFVKTTAEGVVRVRKSkgkYAYLLESTMNEY 731 African clawed ...
Feature 1                            #                                         
1LBC_A       200 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYdkGEC 261 Norway rat
CAA61679     733 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYdkGEC 794 chicken
1GR2_A       216 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYdkGEC 277 Norway rat
P19491       733 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYdkGEC 794 Norway rat
NP_001001775 733 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYdkGEC 794 chicken
P42262       733 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYdkGEC 794 human
NP_001104484 733 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYdkGEC 794 chicken
NP_571970    729 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGTLDKLKNKWWYdkGEC 790 zebrafish
AAL13229     729 IEQRkpCDTMKVGgnLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYdkGEC 790 zebrafish
NP_001153152 732 IEQRkpCDTMKVGgnLDSKGYGIATPKQSPLGNAVNLAVLKLNEQGLLDKLKNKWWYdkGEC 793 African clawed frog

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