Conserved Protein Domain Family
PBP2_Cystine_like_1

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cd13713: PBP2_Cystine_like_1 
Substrate binding domain of putative ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold
This group contains uncharacterized periplasmic cystine-binding domain of ATP-binding cassette (ABC) transporters. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270431
Aligned: 18 rows
Threshold Bit Score: 286.103
Created: 16-May-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to Neisseria Gonorrhoeae L-cystine ABC transporter.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #                                       #                #       #     
AET70036      45 KITFAMSGqYPPFNYFneeNELTGFDVEIGQEIAKr-iNVNPEPIAt-eWDGIIAGLTTSKFDMILGSMaitdERLQKVN 122 Desulfosporosin...
NP_883022     41 EIRIATSDsLKPWGYMddtNKPIGFNLDVSREMGKrmgFGKVTFVTd-sYKNFISGLNADRYDMVVAILtpteERRKSAD 119 Bordetella para...
EHR61337      42 TLRVALTQaNPPWNFLd-dGKPAGYDVDVAHEVARrigVDNVEFVAs-nFQSFIEGVRAGRFDIVISGQtiteERKQQVG 119 Saccharomonospo...
YP_390230     39 EISFAMSGgYPPFNFYndsNELTGFDVDVAKEVASr-lGVAFVPVTt-eWSGIIEGLRSGAYDGILGSMavtpERLKVVN 116 Desulfovibrio d...
ACT07820      35 VVRNVLFNdYPPFSYLddkNQLVGFDVDVANAVAKk-lGTRLELATp-gWETIVGGKWQGRWDMCICSMtpnaERAKVLD 112 Dickeya zeae Ec...
ADZ85153      37 ELTFAMTGqYPPFNYIdesGELVGFDIDIANAIADk-mGVTAKPETi-aWEGIITGLTGKRFDMIIGSMaiteERLEKVS 114 Clostridium len...
YP_002233085  43 TLRVANTQsSPPWSLLderNQPAGYDVEVAREVGKr-iGVKQVVFVadaYKNFVEGLKAGKYDLVMNDLtptaERSKQVD 121 Burkholderia ce...
CAD31275      38 TLRVAAGAdWGLIAHLdekNELVGYDIDVAKGIAKy-lGVNAEFVTp-gWDLIAAGNWAGRWDIGTGQMaptkARADKFD 115 Mesorhizobium loti
YP_474160     45 VLRVSTDSnYRPQSYLnpdGSWEGFDVDVAREIAKr-lGVKAEFLDi-nFDVITAGSWNGRWDVNVGSMtvtaERQKALL 122 Synechococcus s...
YP_001668815  38 VMNVATAAnWPPQSFLgedNTLKGFDIDVANEIGKr-lGTQVAFVTp-eYGIITAGRWASRWDLSVGSMtpttERGRVLD 115 Pseudomonas put...
Feature 1                                          #   ##                                        
AET70036     123 FSNPYYRSgAQIIVPSdsti-sgadDLKGKTVGVVlgtTFETKARel----------------gANVNTYKgd-pDAFHD 184 Desulfosporosin...
NP_883022    120 FSNPYMVVsKNIFVRDdntsirsleDLAGKRLGVAagtTDEAWARqhv--------------kdAQIRVYDnf-fLALQD 184 Bordetella para...
EHR61337     120 FSRPYQVNgVAIFVPNddrgivslsDLEGKVVAVSagtTQEQFAReei--------------pgAQVKTYQna-tLGLTD 184 Saccharomonospo...
YP_390230    117 FSNAYYYSgAQVMVKDsapy-tapqELKGKVFGVVtgtTFAEDAEkl---------------gaGEVRLYKdd-tQTLLE 179 Desulfovibrio d...
ACT07820     113 FSTPYYSTfAVLIVHKdekniqsaaDLSNKKVGLGlgsSYENYLNkslaipgg----kpidfpfNHVQAVPtdedMAFRN 188 Dickeya zeae Ec...
ADZ85153     115 FSNPYYYDgAQLFVMQdsdi-adinDLTNAKVGVVtgtTFHSYLSeny--------------pnLEILQFEsd-vDNLRA 178 Clostridium len...
YP_002233085 122 FAKPYGVEdFRIFVRTdnthihgqaDLKGKRVGVTtgsSNETWARahl--------------kdADIRAYDng-gLVFND 186 Burkholderia ce...
CAD31275     116 FSVPYFYDrTVIVVHKdska-tkgsDLEGKKIGVNggtVAEAYANqtytpddpnaapvpydfkaGEVKTYGns-tIAFDD 193 Mesorhizobium loti
YP_474160    123 FTIPYYYTpASFVVHQastl-tdiaALEGKRVGVGtatTYQAYLEgnltlege---tiqvpaprVDIRIYDtd-sLALQD 197 Synechococcus s...
YP_001668815 116 FPAIYYYTpYVFAVHKdaag-sntaDLNGKTIGVEagtTSEDYINrrlkidaadvpafsysvepGEVQTYGds-mGPLDD 193 Pseudomonas put...
Feature 1                     #                                                                  
AET70036     185 MLNGr---lDAVITDkIVGLNAIKNnnyPFKLVGdli-yveKMGIAIRKds----pELLDAVNKALTDMmddGTYKAISE 256 Desulfosporosin...
NP_883022    185 LAIGr---vDARITDrVTGMTAAKEgrfPVKIAGpdl-sqdIGAIAYKKgq----dDLAAIVNKVIQEMvddGSLNEISR 256 Bordetella para...
EHR61337     185 LARGn---aDAMLVSrFQGSYLAEQndlAVKPVGkll-eseVNGMSFRKgs----pEFRKEVDAAIAGMiadGTLSRISR 256 Saccharomonospo...
YP_390230    180 LDNGv---vDAVITDrVVGVNAVNSgrfNIRMLGapl-rseNIAVAFRKge----dTLLKEVNAVLAAMhedGTLASLSR 251 Desulfovibrio d...
ACT07820     189 LALGpgkrlDAVISDrITAKPRIEKl-pQLRILQqly--aePNWIAVDKgd----pEWSKTLADAISALradGTLKAISM 261 Dickeya zeae Ec...
ADZ85153     179 LKQGr---mDALVTGkFVGLSAPSKygiNIKVAGtll-yfeEIGVAIRKed----aELLDAVNTALQDMiddGTYEEISQ 250 Clostridium len...
YP_002233085 187 LGSGr---lDAVIIShFGGMKYANVnhlPVKEVGepl-iyqLSAPALAKgq----pALLAAVDKAIDDMaadGTLERLAK 258 Burkholderia ce...
CAD31275     194 LRLGdgvrlDAVITDeTFTEGAIKSg-yPIKIIDrlf--alPAAIPMMKgd----kELVEKVSAAIKSMrddGTLSKLSV 266 Mesorhizobium loti
YP_474160    198 LALGdgtrlDAVLTAlPTAENAIREg-lPLKTLGdpv-yyeALAVALDRsspapseSLQAKINEILESMhadGTLTALSK 275 Synechococcus s...
YP_001668815 194 LRMGngtrlDATLSAlPTVMGAIKAg-yPITPVQgkpayyePLAIATDKgd----dAFNAELAKAVEGMkadGTLKQLSE 268 Pseudomonas put...
Feature 1            
AET70036     257 KYFN 260 Desulfosporosinus orientis DSM 765
NP_883022    257 KWLA 260 Bordetella parapertussis 12822
EHR61337     257 QWLG 260 Saccharomonospora cyanea NA-134
YP_390230    252 KWLN 255 Desulfovibrio desulfuricans G20
ACT07820     262 KWFG 265 Dickeya zeae Ech1591
ADZ85153     251 KWFS 254 Clostridium lentocellum DSM 5427
YP_002233085 259 RWVG 262 Burkholderia cenocepacia J2315
CAD31275     267 KWYG 270 Mesorhizobium loti
YP_474160    276 RYYG 279 Synechococcus sp. JA-3-3Ab
YP_001668815 269 KWYG 272 Pseudomonas putida GB-1

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