Conserved Protein Domain Family
VKOR_2

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cd12919: VKOR_2 
Vitamin K epoxide reductase family in bacteria
This family includes vitamin K epoxide reductase (VKOR) present only in bacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.
Statistics
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PSSM-Id: 240602
Aligned: 13 rows
Threshold Bit Score: 215.309
Created: 25-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeredox center
Feature 1:putative active site [active site]
Evidence:
  • Comment:four cysteines and one serine or threonine are inferred to be the active center

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #            #     #                  
ABD81248  527 GWEFSPSDWFQRLPIILLAFVGFFISRYLTAYQLEHIdsVWEPFFggaidnaknGTEEIITSSVSkawPVPDAGLGALTY 606 Saccharophagus deg...
AAZ97424  519 GWDYTPSGWTQRIPIIALAFVGLAISRYLAAYQLGHTesAWDPFFg-------eGTERIITSEVSqawPVPDAGLGATTY 591 Thiobacillus denit...
ABF54261  545 GWTYSPSTFAQRLPIAYLGLIGLLISRVLTAYQLGHInsAWEPFFagaptdprnGAEEIITSDVSkawPIPDAGLGAISY 624 Sphingopyxis alask...
ACT18774  177 GWSYNPSSWPQRWIMIALGLVGWLVSRYLAAFQLGYLpeVADPFFg-------eGSRRVLTSDMSralPVSDAGLGALAY 249 Geobacter sp. M21
Q92XE7    528 GWSYSPSSFTQRMPIVALAFVGLFVSRYLAAYQMGHVdgLWDPFFgpgeapvrnGSEAVVTSWVSkgfPIADAGLGAFAY 607 Sinorhizobium meli...
ADR22063  244 GWSYNPSSWPQRSIMIGLAFIGWLASRYLGAFQLGYIdyAWDPFFg-------dGTMTVLDSDMShsfPISDAALGTLAY 316 Flexibacter tractu...
ACT18779    7 GWDYNPSTFKQRLPIVVLALAGFFIAAYLTLFQVNAIeeVWEPFFg-------eGSRRILNSYIShllPVPDAGLGAAGY 79  Geobacter sp. M21
EFB40582  122 GWSYNPSSWPQRAPIIALGFVCWFSSRYMASYQLGYLnhIWDPIFd-------nGTLKVITSSVSkafPISDAGLGAFAY 194 Parachlamydia sp. ...
AEH36198  202 GWSYNPSTGAQRAPLIALGVFGFFASWYMAAFQLGYIesVWDPIYg-------sGTEQILTSRISeafPVSDAGLGAVAY 274 Halopiger xanaduen...
ABG05667    9 GWEENPTSWPRRLQVAALAAAGLLVAGYLTLYQLGLTggVWDPFF---------PQGSPKVLRLFe--PVPDAALGALAY 77  Rubrobacter xylano...
CCF85042  121 GWSYNPSSWFQRAPVIALGIVSFVIARYLAAFQLGYIdqVWDPFFg-------eGTRRALTSSVShawPVSDAGLGALAY 193 bacterium Lb
CCG01454  190 GWSYNPSSWPQRAILAALAFVGLVVSRYLAAFQLGYLesVWDPFFgs------aSTESVLNSSIShmlPISDAGLGGIAY 263 Blastococcus saxob...
CCH57022   14 GWDYNPSTWGQRLPLVAVAVVGLGISLYLGLYQLRIIpsVWDPFFgs------aSSQKVLNSPLSrllPIPDALLGAIAY 87  Fibrisoma limi BUZ 3
Feature 1                                                       #  #                          
ABD81248  607 LLEILtgvigsrnRWRTMPWLVLFFGFMIIPLGAISITFIIiqpivldtWCTLCLIAAVAMLIQIPYSfDEIVATiQFLK 686 Saccharophagus deg...
AAZ97424  592 MLEILtgiiggraRWRTMPWLVVLFGVMIVPLGAISLFFIIiqpivigtWCTLCLVAAAAMLLQIPYSlDELVASgQFLL 671 Thiobacillus denit...
ABF54261  625 LLEILmavmggrdRWRTMPWMVTFFGILVIPLGVVSIYFIIiqpiligtWCTLCLIAALAMLIMIPFAlDEVIAMgQFLY 704 Sphingopyxis alask...
ACT18774  250 TLEFLmgwmgseaRWRTMPWMVTLFGILVIPLGLVHIFLVAsqpvavgeWCTYCLLAAAIMLPMIPLEvDEVIAMcQFMA 329 Geobacter sp. M21
Q92XE7    608 ALDILagaigdsrRWRTMPWMVLLFGLLIVPLGAVSVSFIIiqppligaLCTLCIIQAAVTVVLIPYSiDEVLATiQYLW 687 Sinorhizobium meli...
ADR22063  317 TLEFLmgymggtsRWRTMPWMVTLFGILVIPLGFVSIFLIVsqplsvgaWCSICLFSAIVMLPMIPLQiDEVIAMwQHMV 396 Flexibacter tractu...
ACT18779   80 LLDAVtgviggrgRWRTMPWMVIVFGVAVGPLGAVSVLLVIfqpvlfdaWCTLCLATAVISVLMIGPAmDEVLASlQFVK 159 Geobacter sp. M21
EFB40582  195 TIETLtgfkggikRWYTMPWAVIFFGVLVIPVGLTSIILIMlqpilvgyWCFWCLLTAFCMLAMIALTvDEVAATlQFLS 274 Parachlamydia sp. ...
AEH36198  275 SIEALmgfmgdrrRWRTMPWMVAFFGVVVIPLGFVQVLLVImqpimvgtWCTLCLLSAFGMLWMIALTvDEVVAMgQYVV 354 Halopiger xanaduen...
ABG05667   78 GTEIVlsfvggedRWRTMPWTTLAFGATVFAGALVSVLLMIaqpvlaraWCTLCLASAGISLLLCGRGaEEPLASlQHLR 157 Rubrobacter xylano...
CCF85042  194 LLEVLsgfmgdrlRWRTMPWMVLMFGVLVIPLGLTSIILVIlqpvavgtWCTLCLITALTMLIMIPLAvDEVVAMgQFLA 273 bacterium Lb
CCG01454  264 TFEFLmafmggvaRWRTMPWMVAMFGVLVIPLGLAHIALVMsmpvavhaWCTFCILAGLVMLPMVALTvDEVVAMgQHVK 343 Blastococcus saxob...
CCH57022   88 GVDAItgvfgrtgRWKTLPWLVVLFGVAVGPMGTVSVLLVIaqpilenaWCTLCLISAAISIAMIGPAmDEVLASlQFLQ 167 Fibrisoma limi BUZ 3
Feature 1                        
ABD81248  687 RRAQAGq---pWMLILFTG 702 Saccharophagus degradans 2-40
AAZ97424  672 DRRRQGk---sLILAFFRG 687 Thiobacillus denitrificans ATCC 25259
ABF54261  705 WAKCRGk---pLIRTFFKG 720 Sphingopyxis alaskensis RB2256
ACT18774  330 AKKRQGa---sLWKVFWLG 345 Geobacter sp. M21
Q92XE7    688 RVRKAGe---pFWRTFWMG 703 Sinorhizobium meliloti
ADR22063  397 QRKQKGd---sLWKVFWKG 412 Flexibacter tractuosus DSM 4126
ACT18779  160 QSAARGq---sVWTVFWKG 175 Geobacter sp. M21
EFB40582  275 QSTKNGn---sFWKTFWKG 290 Parachlamydia sp. Hall's coccus
AEH36198  355 RLMRRGd---sLWTAFWMG 370 Halopiger xanaduensis SH-6
ABG05667  158 RVRDSGg---sVWRALWGT 173 Rubrobacter xylanophilus DSM 9941
CCF85042  274 QVHRERq---pFWTNFWRG 289 bacterium Lb
CCG01454  344 QSRRRGdrdgsTWKIFWQG 362 Blastococcus saxobsidens DD2
CCH57022  168 RVKRSGq---sVWKAFWGN 183 Fibrisoma limi BUZ 3

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