5BJR


Conserved Protein Domain Family
RRM_cpo

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cd12684: RRM_cpo 
RNA recognition motif (RRM) found in Drosophila couch potato (cpo) coding RNA-binding protein and similar proteins
This subfamily corresponds to the RRM of Cpo, an RNA-binding protein encoded by Drosophila couch potato (cpo) gene. Cpo contains a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It may control the processing of RNA molecules required for the proper functioning of the peripheral nervous system (PNS).
Statistics
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PSSM-Id: 410085
Aligned: 7 rows
Threshold Bit Score: 153.527
Created: 11-Jan-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5BJR_A         7 VRTLFVSGLPMDAKPRELYLLFRGArGYEGALLKMTskngkptSPVGFVTFLSQqDAQDARKMLQGVR-FDPEAAQVLRL 85  Caenorhabditis ...
EFX80516       2 VRTLFVSGLPMDAKPRELYLLFRAYdGYENSQLKVTskngkttSPVGFVTFATRaSAEGAKQDLQGVR-FDPDIPQTIRL 80  common water flea
NP_492508     30 VRTLFVSGLPMDAKPRELYLLFRGCrGYEGALLKMTskngkptSPVGFVTFLSQqDAQDARKMLQGVR-FDPECAQVLRL 108 nematode
XP_013420802  39 VRTLFVSGLPMDAKPRELYLLFRAYkGYEGSLLKVTnkngkttSPVGFVTFTSRvAAETAKQDLQGVR-FDPDLPQTLRL 117 Lingula anatina
RWS08853       1 VRTLFVSGLPMDAKPRELYLLFRAYkGYEGSLLKVTskngktsSPVGFVTFSTRaGADAAKQDLQQGVrFDPDLPQTIRL 80  Dinothrombium t...
ELU06415       2 VRTLFVSGLPMDAKPRELYLLFRAYkGYEGSLLKVTgkngkttSPVGFVTFTSRvAAEAAKQDLQQGVrFDPDLPQTLRL 81  Capitella teleta
OWF40918      13 VRTLFVSGLPMDAKPRELYLLFRTYeGYENSLLKVTnkngkntSPVGFVTFNTRkAAEAAKADLQGVR-FDPDLPQLLRL 91  Yesso scallop
5BJR_A        86 ELAK 89  Caenorhabditis elegans
EFX80516      81 EFAK 84  common water flea
NP_492508    109 ELAK 112 nematode
XP_013420802 118 EFAK 121 Lingula anatina
RWS08853      81 EFAK 84  Dinothrombium tinctorium
ELU06415      82 EFAK 85  Capitella teleta
OWF40918      92 EFAK 95  Yesso scallop
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