2DHA


Conserved Protein Domain Family
RRM2_ESRPs_Fusilli

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cd12508: RRM2_ESRPs_Fusilli 
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RNA recognition motif 2 (RRM2) found in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins
This subfamily corresponds to the RRM2 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli.Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine.
Statistics
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PSSM-Id: 409930
Aligned: 12 rows
Threshold Bit Score: 129.014
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DHA_A        23 QVIVRMRGLPFtATAEEVVAFFGqhcpi----tggkEGILFVTYPdGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98   human
Q9H6T0       357 QVILRLRGLPFsAGPTDVLGFLGpecpv----tggtEGLLFVRHPdGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 432  human
XP_002605005 315 EVIVRMRGLPYtATAADILNFFGqscpv----aggeKGILFVRYAnGRSTGDAFVLFETEAYAQLALAKHKESLGKRYIE 390  Florida lancelet
Q9BJZ5       379 QVIIRMRGLPYdATAKQVLDFFTtgdtppchvldgnEGVLFVKKPdGRATGDAFVLFANETDAPKALGRHRESIGQRYIE 458  fruit fly
XP_002736133 321 HIIVRMRGLPFtATAKDVLVFFGdecpv----sgaeEGVLFVRYPdGRSTGDAFVLFSTEANATSALAKHKENLGSRYIE 396  Saccoglossus k...
A1L1G1       325 QIIVRMRGLPFnATAEQVLQFFSpacpv----tdgsEGILFVRFPdGRPTGDAFVLFSCEEHAQNALKKHKDMLGKRYIE 400  zebrafish
EDO47286     110 EVIIRMRGLPFsTKAADVVRFFGddvpv----yrgeGGILMVRGRnGKATGDAFVLFETEEHGRAALKKHREVLGSRYVE 185  starlet sea an...
CBY22933     233 VAIARMRGLPFsASKEDILQFLCeihi-----vngrDGIFLIKTAeGKPTGDAFVLLASEDDAVQALGRHKANLRDRYVE 307  Oikopleura dioica
GAA27695      12 DGTLRLFGLPFsVTKAQIQAFFEgfe-------ivkDGIGLLTDHhGRPTGEAFVQFVSPEVARLAAGKHKHLIDGRYVE 84   Clonorchis sin...
EFJ14378     138 TGVVRMRGMPYsCTSADIMAFFKgmq-------vapDGIFLCTHAdGRPTGEAFVEFINEETAARAMQLHREPMGSRYVE 210  Selaginella mo...
Q22708       280 AIIVRMRGLPYdCTDAQIRTFFEplk--------ltDKILFITRTdGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIE 351  nematode
XP_007887693 324 QVIIRMRGLPFtATVDDVLGFFGnecpv----tgckEGLLFVKYPdGRPTGDAFVLFACEEYALNALKKHKEILGKRYIE 399  elephant shark
2DHA_A        99 LFRS 102  human
Q9H6T0       433 LFRS 436  human
XP_002605005 391 LFRS 394  Florida lancelet
Q9BJZ5       459 LFRS 462  fruit fly
XP_002736133 397 LFRS 400  Saccoglossus kowalevskii
A1L1G1       401 LFKS 404  zebrafish
EDO47286     186 LFRS 189  starlet sea anemone
CBY22933     308 VFRS 311  Oikopleura dioica
GAA27695      85 ISFS 88   Clonorchis sinensis
EFJ14378     211 LFKS 214  Selaginella moellendorffii
Q22708       352 LFKS 355  nematode
XP_007887693 400 LFRS 403  elephant shark
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