3TO8


Conserved Protein Domain Family
RRM4_hnRNPL_like

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cd12427: RRM4_hnRNPL_like 
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RNA recognition motif 4 (RRM4) found in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins
This subfamily corresponds to the RRM4 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 409861
Aligned: 21 rows
Threshold Bit Score: 108.481
Created: 4-Jun-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3TO8_A       128 PSNVLHFFNAPLevTEENFFEICDElgvkrPSSVKVFSGKs----eRSSSGLLEWESKsDALETLGFLNHyqmknpngpy 203 human
CBY18131     326 PNKSLHYYNAPMefAENDIQEICDNen-lnIVQIKVFPPKds--kmKTSSGIIEFANTeEAIKALVLLNHlel-----eg 397 Oikopleura dioica
NP_001036561 145 PSKILHFFNTPPglTEDQLIGIFNIkd-vpATSVRLFPLKt----eRSSSGLIEFSNIsQAVLAIMKCNHlpiegkgtkf 219 fruit fly
EFX70513     344 PCKVLHFYNTPPglTEEDLRKVFEEngtafPAEVRLLQNKs----eKSSSGHLEFSTLqEAVEALVICNHiplsganvkw 419 common water flea
NP_495411    426 PTNTLHWFNAPGtmDEQALLDLMAEktehkPVKIDIFPSRn----eRSAAGTAEFETVeIANEVLALVNHtpvnspygsa 501 nematode
Q8WVV9       452 PSCVLHYYNVPLcvTEETFTKLCNDhevltFIKYKVFDAKps---aKTLSGLLEWECKtDAVEALTALNHyqirvpngsn 528 human
PFX20567     374 PTKVLHFLNAPPdfDTEKVKEMCSNcgvepPVAVKVFPNAs-----RSAAGLLEWNSPsQALDALAACNHyvirdpaakt 448 Stylophora pist...
XP_014348467 426 PSRILHFFNAPPeiTEEIFEKVCEEqkltkFTACTLFLPKs----dRSCSGLLEWESIsQAMEAIVLLNHyplklqdgqi 501 coelacanth
XP_008314682 321 PSAILHFYNAPPtfSQQQLHQLCEEnsvpsFIRFKVFKSKassvtpQTQSGLLEFDTRnAAAETLIVLNNhritvknssa 400 tongue sole
PAA76296     466 PTKTLHFFNFPLgvTENDLRQFFLQhggplPDKAVVFKPKqq--dqRAAIGLVEFDTVeNAVLALMRSNHaevkl-sera 542 Macrostomum lig...
3TO8_A       204 PYTLKLCF 211 human
CBY18131     398 RQMLKLCF 405 Oikopleura dioica
NP_001036561 220 PFIMKLCF 227 fruit fly
EFX70513     420 PYTTKLCF 427 common water flea
NP_495411    502 PFIVKWAY 509 nematode
Q8WVV9       529 PYTLKLCF 536 human
PFX20567     449 IFTVKLAF 456 Stylophora pistillata
XP_014348467 502 PYTLRLCF 509 coelacanth
XP_008314682 401 QFTLKLCF 408 tongue sole
PAA76296     543 KFHAKLSF 550 Macrostomum lignano
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