1X5O


Conserved Protein Domain Family
RRM2_MSSP

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cd12244: RRM2_MSSP 
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RNA recognition motif 2 (RRM2) found in the c-myc gene single-strand binding proteins (MSSP) family
This subfamily corresponds to the RRM2 of c-myc gene single-strand binding proteins (MSSP) family, including single-stranded DNA-binding protein MSSP-1 (also termed RBMS1 or SCR2) and MSSP-2 (also termed RBMS2 or SCR3). All MSSP family members contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), both of which are responsible for the specific DNA binding activity. Both, MSSP-1 and -2, have been identified as protein factors binding to a putative DNA replication origin/transcriptional enhancer sequence present upstream from the human c-myc gene in both single- and double-stranded forms. Thus they have been implied in regulating DNA replication, transcription, apoptosis induction, and cell-cycle movement, via the interaction with C-MYC, the product of protooncogene c-myc. Moreover, they family includes a new member termed RNA-binding motif, single-stranded-interacting protein 3 (RBMS3), which is not a transcriptional regulator. RBMS3 binds with high affinity to A/U-rich stretches of RNA, and to A/T-rich DNA sequences, and functions as a regulator of cytoplasmic activity. In addition, a putative meiosis-specific RNA-binding protein termed sporulation-specific protein 5 (SPO5, or meiotic RNA-binding protein 1, or meiotically up-regulated gene 12 protein), encoded by Schizosaccharomyces pombe Spo5/Mug12 gene, is also included in this family. SPO5 is a novel meiosis I regulator that may function in the vicinity of the Mei2 dot.
Statistics
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PSSM-Id: 409690
Aligned: 12 rows
Threshold Bit Score: 124.796
Created: 15-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1X5O_A        26 TNLYISNLPLSMDEQELENMLKpfGQVISTRILRDssg-tsRGVGFARMEStEKCEAVIGHfNGKFIktppg---vsapT 101 human
BAB20902     169 TNLYLSGLPPNFNEHDLEQMLLpyGQVISTRILRDsng-vsKGVGFARMESkEKCEVIISKfNGKYLtggn-----thsT 242 Halocynthia ror...
Q15434       135 TNLYISNLPLSMDEQELEGMLKpfGQVISTRILRDtsg-tsRGVGFARMEStEKCEAIITHfNGKYIktppg---vpapS 210 human
Q6XE24       140 TNLYISNLPISMDEQELENMLKpfGHVISTRILRDang-vsRGVGFARMEStEKCEVVIQHfNGKYLktppg---ipapS 215 human
EFX85883      85 TNLYLANLPAHITEQDLHDMLYkyGTVISTRVLRDggs-qsRGVGFARMESrEKCDEIISIfNGKLLsg---------sT 154 common water flea
XP_001641651  94 TNLYIQNLPQNCDEAMLENMFSkyGKVISTRILRDkdt-nsKGVGFARMESaEKCEQVIKDfNKKMLpgev----slrcI 168 starlet sea ane...
XP_002436024  93 TNLYIANLPLYMVEQDLEQMLSnhGNVISTRILRDnns-qsRGVGFARMESkEKCEHIIATfNTKVLpgqcaltllagsK 171 black-legged tick
17554534     162 TNLYIANLPLDFTEQMLETELNkfGMVISTRILRTpdn-qsRGVGFARMDSkEKCEVIISAlNGGRFdtm------skeG 234 Caenorhabditis ...
Q2L4W6       384 TNLYISNLPLHWNESDISTLFKp-SKIISNRVLRDske-qsRGVGFARMQDrKTAEDIINKfNNFVLdp---------aL 452 Schizosaccharom...
EAA35208     343 TNLYLSNLPKRLTEAELNAIFVg-YHIVSSKILRDsmg-nsRGVGFARFETrDECEDVIKKfHGAPIge---------eG 411 Neurospora cras...
EER38562     377 TNIYCTNVPIDWVEADLRRHFQp-YQVVSEKISRDektgvsKEVGFARFESrDIAEKVLSEfHNVTAk----------dG 445 Ajellomyces cap...
PWA31371     116 TNLYISNLPLSMDEQELENMLKhfGQVISTRILRDpsg-vsRGVGFARMEStEKCEAVISHfNGKFIktpt-----gaaS 189 western mosquit...
1X5O_A       102 EPLLCKFSG 110 human
BAB20902     243 EPLLCKFAD 251 Halocynthia roretzi
Q15434       211 DPLLCKFAD 219 human
Q6XE24       216 EPLLCKFAD 224 human
EFX85883     155 QPLLVKFAD 163 common water flea
XP_001641651 169 QELVVKFAD 177 starlet sea anemone
XP_002436024 172 EPLLVKFAD 180 black-legged tick
17554534     235 PALLIKQAD 243 Caenorhabditis elegans
Q2L4W6       453 PPLQIRFAD 461 Schizosaccharomyces pombe 972h-
EAA35208     412 MLMQVRYAD 420 Neurospora crassa OR74A
EER38562     446 VKLLLRFAD 454 Ajellomyces capsulatus H143
PWA31371     190 EPLLCKFAD 198 western mosquitofish
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