Conserved Protein Domain Family
RRM1_RBM40_like

?
cd12238: RRM1_RBM40_like 
RNA recognition motif 1 (RRM1) found in RNA-binding protein 40 (RBM40) and similar proteins
This subfamily corresponds to the RRM1 of RBM40, also known as RNA-binding region-containing protein 3 (RNPC3) or U11/U12 small nuclear ribonucleoprotein 65 kDa protein (U11/U12-65K protein), It serves as a bridging factor between the U11 and U12 snRNPs. It contains two repeats of RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), connected by a linker that includes a proline-rich region. It binds to the U11-associated 59K protein via its RRM1 and employs the RRM2 to bind hairpin III of the U12 small nuclear RNA (snRNA). The proline-rich region might be involved in protein-protein interactions.
Statistics
?
PSSM-Id: 409684
Aligned: 17 rows
Threshold Bit Score: 98.4762
Created: 22-Sep-2011
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q96LT9        28 TLLVRHLPAELTaEEKEDLLKYFGAqSVRVLSdkg-rlKHTAFATFPNekAAIKALTRLHQLKLLGHTLVVEFA 100 human
XP_002121929   9 IVLVKHLPPELSlKEKQDLLKCFGAnDVRVMSskg-qlRNAAFATFSDtkHASGAIKRLHQLEVLGYVLSAEHA 81  Ciona intestinalis
XP_002114596   5 ELLIRYLPSIASaSDIKELLSNFGAtHVHYFGqhg-kmKNCAIAKFDNenTAKQALQRLHQLQIFDQRLVAVYT 77  Trichoplax adhaerens
XP_003381334 468 TLLVRHLPACLTdSDKMSLLSQFGAcRVRVMSsdg-plKHCAFASFRSvqEARVALLQLHQLNVVGSRLVVTWA 540 Trichinella spiralis
BAH57015      29 TLLVRHLPDGIPhDIVSRLFSQYGAsAVRPCSgg--klRNAAFVDFKNeaFASQAHRQLNGLRFLGKVLQVQRA 100 thale cress
EFX85194      13 TLIVRRLPECLTeRDLNDLFRYFGAqAVRKEKpkgrqrNSTIIVKFNSheDASFALTRLHQLKVVGKRIVAEYA 86  common water flea
EFA01147       6 VLKIKNLPKELSdAEKEDFLKHFGAsKVKIITsks-cqKSVAFARFDSkeVAREVLFRLHQAYILKNRLCVEYA 78  red flour beetle
EGI61146       2 TLRILHLPPQLSdDRRDALLQRYGAtKTKTIRps--skYTVTFAKFLSqqLAAEALLRLHQLNIRGQYLSVEYA 73  Panamanian leafcutter...
CCD77531       7 CLIFKHFPPEIAeDECVTFLKSLGAtTAQYFGcsg-slKYCAFAEFASeqHAWNIIKNLHQKKILDRRLSVEFF 79  Schistosoma mansoni
EAT43514       7 RLCIRNFPESFSeSDVKEFLSRFGIgSVEFLKrr---rKLTAIVYSSEqvLTKCILSRLHQLKVLDKRLIVEYY 77  yellow fever mosquito
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap