Conserved Protein Domain Family
bHLH_TS_ATOH1_like

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cd11430: bHLH_TS_ATOH1_like 
basic helix-loop-helix (bHLH) domain found in protein atonal homologs ATOH1, ATOH7 and similar proteins
The family includes ATOH1 and ATOH7. ATOH1, also termed Class A basic helix-loop-helix protein 14 (bHLHa14), or helix-loop-helix protein hATH-1 (hATH1), or Math1, or Cath1, is a proneural bHLH transcription factor that is essential for inner ear hair cell differentiation. It dimerizes with E47 and activates E-box (CANNTG) dependent transcription. ATOH1 is a mammalian homolog of the Drosophila melanogaster gene atonal and mouse atonal homolog 1 (Math1). ATOH7, also termed Class A basic helix-loop-helix protein 13 (bHLHa13), or helix-loop-helix protein hATH-5 (hATH5), or Math5, is a bHLH transcription factor involved in the differentiation of retinal ganglion cells. The family also includes protein Amos (also termed absent MD neurons and olfactory sensilla protein, or reduced olfactory organs protein, or rough eye protein). It is a bHLH transcription factor that promotes multiple dendritic neuron formation in the Drosophila peripheral nervous system.
Statistics
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PSSM-Id: 381436
Aligned: 10 rows
Threshold Bit Score: 90.5722
Created: 9-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Mus musculus myoD (1MDY) basic region binds DNA.
  • Citation:PMID 8181063

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #   # ### #    #                  ####                  
Q92858       160 RRLAANARERRRMHGLNHAFDQLRNVIPsfn-ndKKLSKYETLQMAQIYINALSELL 215 human
Q9Y0A7       139 RRLAANARERRRMNSLNDAFDKLRDVVPslg-hdRRLSKYETLQMAQAYIGDLVTLL 194 fruit fly
AFB74470      29 KRTAANDRERKRMYCLNRAFDQLRDVVPyss-nqKKMSKFETLLMAQTYIETLVEML 84  Schmidtea polychroa
Q8N100        41 RRLAANARERRRMQGLNTAFDRLRRVVPqwg-qdKKLSKYETLQMALSYIMALTRIL 96  human
OCT59801     123 RRLAANARERKRMLTLNLAFDRLRSVIPttq-nkKKLSKSETLQMAKIYILMLSTEL 178 African clawed frog
XP_013402695  75 KREAANARERRRMHGLNSAFDQLRAVVPqigggeQQLSKYETLQMAQTYIQTLQELL 131 Lingula anatina
CAF90266      25 ATLAANARERKRMLGLNIAFDRLRSVIPnle-sdKKLSKSETLQMAQIYIATLSELL 80  spotted green pufferfish
XP_007897924 108 RRLAANARERRRMRGLNAGFDLLRSVVPein-sqKKLSKYETLQMAQIYIGALSELL 163 elephant shark
Q10574        73 RRSAANERERRRMNTLNVAYDELREVLPeid-sgKKLSKFETLQMAQKYIECLSQIL 128 Caenorhabditis elegans
XP_002124707 194 RRQAANARERRRMEGLNKAFDSLRKVVPsis-rrRKLSKYETLQMALSYIEELGRIL 249 vase tunicate

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