2QL2,2YPA


Conserved Protein Domain Family
bHLH_E-protein

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cd11420: bHLH_E-protein 
Click on image for an interactive view with Cn3D
basic helix-loop-helix (bHLH) domain found in E proteins family
The E proteins family corresponds to class I bHLH proteins, which are widely expressed within the immune system and on which the majority of this chapter will be focused. Members in this family include E2A (also referred to as TCF-3), E47, TCF-12 (also referred to as HEB), and TCF-4 (also referred to as E2-2) in vertebrates, as well as the E protein ortholog, Daughterless (Da), from Drosophila melanogaster. E-proteins are expressed broadly and in certain complexes they are restricted to specific cell types. E-proteins homodimerize and heterodimerize with the tissue specific bHLH factors to bind DNA and regulate transcription and differentiation of cells during development. The activity of the E-proteins is regulated by two main mechanisms: first, the relative concentrations of E-proteins, tissue specific bHLH factors, and the Id proteins, and second, covalent modification.
Statistics
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PSSM-Id: 381426
Aligned: 19 rows
Threshold Bit Score: 85.5329
Created: 9-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingdimer interface
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Structure:2QL2; Mus musculus E47-NeuroD1 complex binds DNA, contacts at 4A.
  • Structure:2YPA; Homo sapiens E47-TAL1 complex binds DNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ## #    #                     ##                
2QL2_A         9 ERVRVRDINEAFRELGRMCQLHlksd-kaqTKLLILQQAVQVILGLEQ 55  house mouse
118249       563 ERIRIRDINEALKELGRMCMTHlksd-kpqTKLGILNMAVEVIMTLEQ 609 fruit fly
XP_002594353  13 ERLRVRDINEAFRELGRMCSLHlntd-kpqTKLTTLHQAVEVITDLER 59  Florida lancelet
ESO06881      29 ERVRVRDINEAFKELGRMVTQRlqsd-kpqTKLAILQQAVFLITTLEN 75  Helobdella robusta
CCD58616     541 ERIRVRDINDAFKELGRMCMMHlnne-rpqTKLTILQQAVSLITSLEQ 587 Schistosoma mansoni
XP_013419609 526 ERIRVRDINEAVKELGHMCSLHlqmd-kpqTKLSILQQAVTLITALEK 572 Lingula anatina
KOF92549     476 ERVRVRDINEAFKELGRMCSLHlsnd-kqqTKLLILQQAVTLITSLEQ 522 Octopus bimaculoides
NP_001021581 311 ERVRVRDINSAFKELGRMCTQHnqnternqTKLGILHNAVSVITQLEE 358 nematode
AOD75280     507 ERIRVRDINEAFKELGRMCQLHlkqd-kaqTKLTILHSAVSVITTLEH 553 purple sea urchin
RDD46716     592 ERIRVRDINEAFKELGRMCVIHapse-kaqTKLSILHQSVQVITQLEA 638 Trichoplax sp. H2

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