Conserved Protein Domain Family
YdjC_like_3

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cd10807: YdjC_like_3 
uncharacterized YdjC-like family proteins from bacteria
This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.
Statistics
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PSSM-Id: 212118
Aligned: 52 rows
Threshold Bit Score: 201.301
Created: 25-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity to Thermus thermophilus YdjC-family protein TTHB029.
  • Comment:This site has a highly negative surface charge.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ## #                                                  # #                  
Q7NYW4      5 LTLCADDFAQSGSISAGILQLVDaGRLSATSVLCQSPLWPELAGEIkar----adRVDVGLHFNLTHp------------ 68  Chromobacterium vi...
NP_895758 137 PQLHADDLGLTNATNTAILALAAaRQLDSASLLVNGNAVESAIEQSrs-----ypSLQLCLHLCLSEgravappqqvsel 211 Prochlorococcus ma...
NP_896263 128 PAIHADDLGLAPGVDTAILDLATaGRLTSASLLVEGATAESAAAAWrcl----pkAQPLVLHLCLTEgpqp--------- 194 Synechococcus sp. ...
EDM31239   15 IHLCADDFGLNAAVDEGILDLVHlGRLTAVSCMAGGVEITRDIPRLlaavsdaprPVQIGLHVTLTEyttlgp-----ir 89  Roseovarius sp. TM...
CAK27308  137 LQFHADDLGLCAAVNASILALADrGLLQGTSVMLNGSDLSGAVAGLal-----rpQLNLVLHLVLTEglpiaeqeqvpdl 211 Synechococcus sp. ...
EFH02062    6 ITLCADDYGLSMGVSHGILEALEaGRLSAVSAMTNGLVWPAMGCELarr----rlDADIGLHFNLTLgaplsp-----mp 76  Methylosinus trich...
EAR19317  136 PRRHADDLGLSHATNQAILTLAEeGLLEGTSLLVNGPVATEGAKAWsvla-adrpTLQLCLHLCLTEgpssappdlipdl 214 Synechococcus sp. ...
ABB25168  136 PLLHADDLGLAAGVDHAIFDLNQsGRLDGASLLVNGPSAKTATDTWrql----pnPPALYLHLCLTEgpgd--------- 202 Synechococcus sp. ...
EAU75509  163 PRLHADDLGLSEASNEAILALIEaGQLDGASLLVQGAEVQPAVRRWknle-arrsDLQLCLHLCLTEgpccapaasipdl 241 Synechococcus sp. ...
ABB33939  121 PLLHADDLGLAEGVDAAILDLAQsRRLQGASLLVNGPSATAAMQAWhdl----adPPPLSLHVCLTEgyrl--------- 187 Synechococcus sp. ...
Feature 1                                                              # # #                  
Q7NYW4     69 ---fDAPVKPLSHWLMKSQLRQl--------SQAALRDEALAQIDRFAEHYG-RLPDFVDGHQHVHaLPVIRDALFDAIR 136 Chromobacterium vi...
NP_895758 212 iddaGRLKCSFGTLMLASCLPKnapk--rrrLERQLRCELNSQIQRFRELTG-LTIIAIDGHQHVHlVPIVLDVILELAP 288 Prochlorococcus ma...
NP_896263 195 -qncPDLPAGFGELLLGSLLPAkr-----raLRDQIVQSIQAQIHRFQQLTG-QHQIQLDGHQHIHlVPLVLDVVLEQPE 267 Synechococcus sp. ...
EDM31239   90 glapECALPGIGRVMRQAYLRRl--------DVPAIRMEIDRQMACLSALMG-RVPDFVDGHQHVHlLPGIRDAVAASWK 160 Roseovarius sp. TM...
CAK27308  212 lngrGELQLKVHRLLLLSFWPRswdwpqlrrQRHQLRLEVDAQIDRFCSLWP-DRPLQVDGHQHVHlMPVVWRQLMASRP 290 Synechococcus sp. ...
EFH02062   77 kfapNGMLPPVGEVIRAAMRGRl--------PMDEIKTEIERQLDRFIAVMG-RAPDHLDGHQHVHaLPGIRTALLDALE 147 Methylosinus trich...
EAR19317  215 vdhqGHLHRSFGHWLLLSLLPPrhpr--rarLVKQLGHEIDAQVRQFQAMRG-EGPIALDGHQHIHlVPVVLDAVLARSS 291 Synechococcus sp. ...
ABB25168  203 -sanVDLPTSFGRLLLASWLPWqr-----rrLKPQIRRSLRQQISRYQQLTG-TNEIHLDGHQHVHlIPMVLDTVLGLAQ 275 Synechococcus sp. ...
EAU75509  242 vdanGHLMLSFGQWLLISLLPPrhpr--rrrVRRQLRAEINAQIERFEQLVGgVAPLALDGHQHIHlVPLIHDTLLNLAQ 319 Synechococcus sp. ...
ABB33939  188 -pncPEIPTGFGTLLLASLLPWqr-----rrIAPQLHTVLLQQISRYRQLTG-LQHIRLDGHQHIHlVPLVLDAVLDLAS 260 Synechococcus sp. ...
Feature 1                                                                                     
Q7NYW4    137 RrwqqdapPYLRSPDKLGHpgd------------nrlKALVLRSVCTNFDEQArerGFSTSPWFGGMYSLsp------qA 198 Chromobacterium vi...
NP_895758 289 Eqg----iSWLRTTAEPLPiglssrywltaltnggwlKWLVLQNLTRMALPRLrkaLVATNARFAGVLFTgrm----vdA 360 Prochlorococcus ma...
NP_896263 268 I-------VWVRTTAESLPqglplklwikalrdggllKWQVLQPLTWLAQRRLkaaGIGSNQRFAGVLFTge-----mtG 335 Synechococcus sp. ...
EDM31239  161 Dwnv--rpGWVRYCGAPERdlaql--------psaqfKSRVLSLMSRAAAPSHdeaGMVTNPRFFGVTEFsp------eV 224 Roseovarius sp. TM...
CAK27308  291 Qhp----lAWVRTVHEPLPvglplgewwsvlrsagwlKWLLLQSLSELQRPDLaarGIATNQWFAGVLCTgrmgdralqA 366 Synechococcus sp. ...
EFH02062  148 Rrdl-ggrVWLRDAGDKLFrivlr--------gsdmrKALAVRAIGRGFEREArerGFPLNDGFAGFSDFdp------eG 212 Methylosinus trich...
EAR19317  292 Rfg----iTWLRSTDEPLPtglplrcwlqscrdagliKWLVLQLLSRRARGAFrqhGITSNGGFAGVLFTgrm----tgA 363 Synechococcus sp. ...
ABB25168  276 Req----vTWIRTTAEPLPtnlplhlwwdcfrqggalKWLVLQCLTSLARPKLraaNMGTNQSFAGVLFTg-------rM 344 Synechococcus sp. ...
EAU75509  320 Ekg----iTWMRSTAEPLPtglplsswraairsagllKWGVLQVLTTRAAGRQrrqGIASNDGFAGVLFTg-------qM 388 Synechococcus sp. ...
ABB33939  261 Des----iTWVRTTREPLPeglplrlwwrslqsvgllKWLVLQLLSGLAIPRLrraGLQTNRRFAGVLFSgsm----fgT 332 Synechococcus sp. ...
Feature 1                                   #                            #          
Q7NYW4    199 DFAGLMQAWLar---------apDRALIMCHPGlptn-------------dasDPIAASRGREFDFLSGS 246 Chromobacterium violaceum
NP_895758 361 PLKAAWEELTsvsf-----sppqTQPLLLSHPAaplkpeeihkgltdfplsrtFFSSTWRQLEWQAVKKI 425 Prochlorococcus marinus str....
NP_896263 336 AALDVAERSLg------------DGDLLLAHPAaavnqdqle--qhqfhrsaaFFSSPWRQHEWKALRAR 391 Synechococcus sp. WH 8102
EDM31239  225 PFGPRMRRWLslan------sgeSGALIMCHPGrasvpa---------agdppDPIHLHRPQELAYLASE 279 Roseovarius sp. TM1035
CAK27308  367 SLRSLRACLLgq---------ehQHALVLLHPSeplqsdrel---erfaesqaFYRSPWRQREAQALLSR 424 Synechococcus sp. RCC307
EFH02062  213 DYAARFENYLra---------pgERHLVMCHPGrvdqd-----------lialDPVTVTREQELAFLLSP 262 Methylosinus trichosporium OB3b
EAR19317  364 PLRAAWSELAslrs-----pdhcTPSLLLAHPGapleqniaq---egftvsqpFAASPWRQKEWRALQAL 425 Synechococcus sp. WH 7805
ABB25168  345 TGAALECCWHtnhfqn--tsengSRAMLLIHPAqpgggdvmq--ehqftesfaFFSSPQRQQEWQAIKNL 410 Synechococcus sp. CC9902
EAU75509  389 GPLALEAGWRelssrapaqnpsqTPPQVLVHPGaplerdlqr---dgfgvsapFAGSPWRQREWEAVRTL 455 Synechococcus sp. RS9916
ABB33939  333 AFRRCWETAYssit-----eeraAQPVVLIHPAlpnaasgmd--qaafqqsvaFFSSTNRQKEWSSAQQL 395 Synechococcus sp. CC9605

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